Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1786 140 2e-28
seq1539 140 2e-28
seq919 140 2e-28
seq743 140 2e-28
seq603 140 2e-28
seq110 138 8e-28
seq741 134 9e-27
seq593 116 2e-21
seq963 109 4e-19
seq986 98.7 7e-16
>seq1786
Length=772
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 546 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 605
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 606 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 640
>seq1539
Length=8485
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6230 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6171
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6170 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6136
>seq919
Length=494
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 410 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 351
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 350 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 316
>seq743
Length=654
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 172 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 231
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 232 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 266
>seq603
Length=631
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 24 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 83
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 84 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 118
>seq110
Length=228562
Score = 138 bits (152), Expect = 8e-28
Identities = 213/302 (71%), Gaps = 4/302 (1%)
Strand=Plus/Plus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246
|||| || || | |||||||||||||| ||| ||||||| ||||||| |||||||
Sbjct 213503 ATGTCGCCGATCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGGTAGAGGGTA 213562
Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAAC--ATGCCTGAAGTCGCTAAGGCGCTCGG 6304
|||| ||||| || || |||||||| |||||| | ||| | || || | ||||
Sbjct 213563 AGGGTAACGGCATCAAGACCGTCATCGTCAACCTAAGCC--AGGTGGCCCACCAACTCGC 213620
Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364
|||||| | | || | || || ||||| | ||| || ||||| ||||| | |
Sbjct 213621 ACGCCCACCAAATTATGTCATCAAGTACTTCGGATTCGAGCTGGGCGCCCAGACCAACAT 213680
Query 6365 TGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424
|| | |||| | || |||| ||| | ||||| | || | | | |||| |||||||
Sbjct 213681 CGACCCCAAAGATGACCGCTGGATCATCAACGGTGCTCACGAGGCAGGCAAGTTGCAGGA 213740
Query 6425 CTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
|| ||||||||||| || |||||| || ||||| ||| ||| | ||||| |||||
Sbjct 213741 CTACCTTGACGGCTTCATCAACAAGTTCGTCCTGTGCAAGGAGTGCAAGAACCCAGAGAC 213800
Query 6485 CG 6486
||
Sbjct 213801 CG 213802
>seq741
Length=500
Score = 134 bits (148), Expect = 9e-27
Identities = 85/92 (92%), Gaps = 5/92 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 202 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 143
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
|||||| |||||||||||||||||||||||||
Sbjct 142 TAATCCATTCATGCGCGTCACTAATTAGATGA 111
>seq593
Length=666
Score = 116 bits (128), Expect = 2e-21
Identities = 86/98 (88%), Gaps = 8/98 (8%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 138 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 79
Query 25957 TAATCCTTTCATGCGCG-TCA--CTAATTAGATGACGA 25991
|||||| |||||||||| ||| |||||||||||||||
Sbjct 78 TAATCCATTCATGCGCGATCATTCTAATTAGATGACGA 41
>seq963
Length=314
Score = 109 bits (120), Expect = 4e-19
Identities = 83/98 (85%), Gaps = 8/98 (8%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 85 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 144
Query 25957 TAATCCTTTCATGCGCG-TC--ACTAATTAGATGACGA 25991
|||||| |||||||||| || || |||||||||||
Sbjct 145 TAATCCATTCATGCGCGATCGTWCTMMTTAGATGACGA 182
>seq986
Length=581
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 5/72 (7%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 510 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 569
Query 25957 TAATCCTTTCAT 25968
|||||| |||||
Sbjct 570 TAATCCATTCAT 581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334939260181295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |