Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1786 140 2e-28 seq1539 140 2e-28 seq919 140 2e-28 seq743 140 2e-28 seq603 140 2e-28 seq110 138 8e-28 seq741 134 9e-27 seq593 116 2e-21 seq963 109 4e-19 seq986 98.7 7e-16 >seq1786 Length=772 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 546 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 605 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 606 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 640 >seq1539 Length=8485 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6230 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6171 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6170 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6136 >seq919 Length=494 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 410 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 351 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 350 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 316 >seq743 Length=654 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 172 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 231 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 232 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 266 >seq603 Length=631 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 24 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 83 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 84 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 118 >seq110 Length=228562 Score = 138 bits (152), Expect = 8e-28 Identities = 213/302 (71%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| || || | |||||||||||||| ||| ||||||| ||||||| ||||||| Sbjct 213503 ATGTCGCCGATCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGGTAGAGGGTA 213562 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAAC--ATGCCTGAAGTCGCTAAGGCGCTCGG 6304 |||| ||||| || || |||||||| |||||| | ||| | || || | |||| Sbjct 213563 AGGGTAACGGCATCAAGACCGTCATCGTCAACCTAAGCC--AGGTGGCCCACCAACTCGC 213620 Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364 |||||| | | || | || || ||||| | ||| || ||||| ||||| | | Sbjct 213621 ACGCCCACCAAATTATGTCATCAAGTACTTCGGATTCGAGCTGGGCGCCCAGACCAACAT 213680 Query 6365 TGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424 || | |||| | || |||| ||| | ||||| | || | | | |||| ||||||| Sbjct 213681 CGACCCCAAAGATGACCGCTGGATCATCAACGGTGCTCACGAGGCAGGCAAGTTGCAGGA 213740 Query 6425 CTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || ||||||||||| || |||||| || ||||| ||| ||| | ||||| ||||| Sbjct 213741 CTACCTTGACGGCTTCATCAACAAGTTCGTCCTGTGCAAGGAGTGCAAGAACCCAGAGAC 213800 Query 6485 CG 6486 || Sbjct 213801 CG 213802 >seq741 Length=500 Score = 134 bits (148), Expect = 9e-27 Identities = 85/92 (92%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 202 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 143 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||||| ||||||||||||||||||||||||| Sbjct 142 TAATCCATTCATGCGCGTCACTAATTAGATGA 111 >seq593 Length=666 Score = 116 bits (128), Expect = 2e-21 Identities = 86/98 (88%), Gaps = 8/98 (8%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 138 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 79 Query 25957 TAATCCTTTCATGCGCG-TCA--CTAATTAGATGACGA 25991 |||||| |||||||||| ||| ||||||||||||||| Sbjct 78 TAATCCATTCATGCGCGATCATTCTAATTAGATGACGA 41 >seq963 Length=314 Score = 109 bits (120), Expect = 4e-19 Identities = 83/98 (85%), Gaps = 8/98 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 85 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 144 Query 25957 TAATCCTTTCATGCGCG-TC--ACTAATTAGATGACGA 25991 |||||| |||||||||| || || ||||||||||| Sbjct 145 TAATCCATTCATGCGCGATCGTWCTMMTTAGATGACGA 182 >seq986 Length=581 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 5/72 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 510 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 569 Query 25957 TAATCCTTTCAT 25968 |||||| ||||| Sbjct 570 TAATCCATTCAT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939260181295