Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq455 111 1e-19
seq530 87.8 2e-12
seq671 82.4 7e-11
>seq455
Length=1194790
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| | || || ||||||
Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| || || ||| || ||| ||||| || || || ||||| ||||
Sbjct 1130927 GACACTATCGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACC 1130870
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || || |||||||| ||| | ||||| | |||||| | || ||||
Sbjct 1130869 AGCAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACA 1130810
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| ||||| || || || || ||||| | ||| |||| ||
Sbjct 1130809 ACATCCAAAAGGAATCGACTCTCCACTTGGTGCTTCGTCTACGAGGTGG 1130761
>seq530
Length=291
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| | || || ||||||
Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| || || ||| || ||| ||||| || || || ||||| ||||
Sbjct 205 GACACTATCGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACC 148
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || || || ||||| || || || |||| |||||| | || ||||
Sbjct 147 AGCAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACA 88
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || || ||| || || || |||||
Sbjct 87 ACATCCAGAAGGAGAGCACACTGCACTTGGTGCT 54
>seq671
Length=186828
Score = 82.4 bits (90), Expect = 7e-11
Identities = 128/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| | ||||| || | ||||| | || ||||||||||| || || |||
Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866
Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125
|| || || ||| || ||| ||||| || || ||||| || ||||| |||||
Sbjct 53867 GA--CAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTT 53924
Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185
| || || || || || ||||| || |||| |||||| || ||| ||||| || || |
Sbjct 53925 TGATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGA 53984
Query 25186 A 25186
|
Sbjct 53985 A 53985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433317728095175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |