Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq455 111 1e-19 seq530 87.8 2e-12 seq671 82.4 7e-11 >seq455 Length=1194790 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || |||||| Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| ||||| || || || ||||| |||| Sbjct 1130927 GACACTATCGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACC 1130870 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || |||||||| ||| | ||||| | |||||| | || |||| Sbjct 1130869 AGCAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACA 1130810 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || || || || ||||| | ||| |||| || Sbjct 1130809 ACATCCAAAAGGAATCGACTCTCCACTTGGTGCTTCGTCTACGAGGTGG 1130761 >seq530 Length=291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || |||||| Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| ||||| || || || ||||| |||| Sbjct 205 GACACTATCGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACC 148 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || ||||| || || || |||| |||||| | || |||| Sbjct 147 AGCAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACA 88 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||| || || || ||||| Sbjct 87 ACATCCAGAAGGAGAGCACACTGCACTTGGTGCT 54 >seq671 Length=186828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | ||||| || | ||||| | || ||||||||||| || || ||| Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| || || ||||| || ||||| ||||| Sbjct 53867 GA--CAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTT 53924 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || || || || || ||||| || |||| |||||| || ||| ||||| || || | Sbjct 53925 TGATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGA 53984 Query 25186 A 25186 | Sbjct 53985 A 53985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317728095175