Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq530 104 2e-17
seq455 104 2e-17
seq653 95.1 1e-14
seq671 93.3 4e-14
>seq530
Length=291
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||||||||| || || | | |
Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || || |||||||||||||| || ||||| || ||
Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||||| |||||| ||||| | || || ||||||
Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || ||| | || || || |||| | || |||||
Sbjct 85 ATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCGTCTTCGTGGAGG 39
>seq455
Length=1194790
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||||||||| || || | | |
Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || || |||||||||||||| || ||||| || ||
Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| || | || || |||||| |||| || ||||||
Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808
Query 22399 ATTCAAAAAGAATCCAC 22415
|| ||||| ||||| ||
Sbjct 1130807 ATCCAAAAGGAATCGAC 1130791
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || ||||| | | ||| ||| | ||| | ||||
Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGCGACACCATCGACAACGTCAAGTCG 1131132
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || || || ||||| || || || |||||
Sbjct 1131131 AAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAG 1131072
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | ||||| ||| ||| | |||||||||||||| || || || |||||| | |||
Sbjct 1131071 CAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1131012
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | || || || ||| | || | || || ||| | |
Sbjct 1130759 ATGCAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCG 1130700
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || || ||||||||||||||||| ||||| || ||
Sbjct 1130699 GACACCATCGACAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAG 1130640
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||||| |||||| ||||| | || || ||||||
Sbjct 1130639 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 1130580
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || ||| | || || || |||| | || |||||
Sbjct 1130579 ATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCGTCTTCGTGGAGG 1130533
>seq653
Length=579839
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|||| ||| | ||| || |||| || ||||| ||||||||||| || ||||| || |
Sbjct 344750 CCGACACCATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGAATCCCACCGGACC 344691
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || || | || || |||||||| ||| | |||||| |||||| || ||| ||||
Sbjct 344690 AGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACA 344631
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||| || || || |||||| | || || || | || |||| || |||
Sbjct 344630 ACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGT 344581
>seq671
Length=186828
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| ||||| | | |||||| | ||| || ||||
Sbjct 53822 ACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATCGACAATGTCAAGAGC 53881
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || ||| | || || || || ||
Sbjct 53882 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTGATCTTCGCTGGAAAG 53941
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||| |||||| | ||||| |||||||| || ||
Sbjct 53942 CAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 53985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419718050478925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |