Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq530 104 2e-17 seq455 104 2e-17 seq653 95.1 1e-14 seq671 93.3 4e-14 >seq530 Length=291 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||||||||| || || | | | Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || |||||||||||||| || ||||| || || Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| |||||| ||||| | || || |||||| Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||| | || || || |||| | || ||||| Sbjct 85 ATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCGTCTTCGTGGAGG 39 >seq455 Length=1194790 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||||||||| || || | | | Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || |||||||||||||| || ||||| || || Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| || | || || |||||| |||| || |||||| Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 1130807 ATCCAAAAGGAATCGAC 1130791 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || ||||| | | ||| ||| | ||| | |||| Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGCGACACCATCGACAACGTCAAGTCG 1131132 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || || || ||||| || || || ||||| Sbjct 1131131 AAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAG 1131072 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||| ||| | |||||||||||||| || || || |||||| | ||| Sbjct 1131071 CAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTCCAT 1131012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || ||| | || | || || ||| | | Sbjct 1130759 ATGCAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCG 1130700 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || ||||||||||||||||| ||||| || || Sbjct 1130699 GACACCATCGACAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAG 1130640 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| |||||| ||||| | || || |||||| Sbjct 1130639 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 1130580 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||| | || || || |||| | || ||||| Sbjct 1130579 ATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCGTCTTCGTGGAGG 1130533 >seq653 Length=579839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | ||| || |||| || ||||| ||||||||||| || ||||| || | Sbjct 344750 CCGACACCATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGAATCCCACCGGACC 344691 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || | || || |||||||| ||| | |||||| |||||| || ||| |||| Sbjct 344690 AGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACA 344631 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || || || |||||| | || || || | || |||| || ||| Sbjct 344630 ACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGT 344581 >seq671 Length=186828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| ||||| | | |||||| | ||| || |||| Sbjct 53822 ACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATCGACAATGTCAAGAGC 53881 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || ||| | || || || || || Sbjct 53882 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTGATCTTCGCTGGAAAG 53941 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||| |||||| | ||||| |||||||| || || Sbjct 53942 CAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 53985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718050478925