Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq680 140 7e-28 seq467 95.1 2e-14 >seq680 Length=821847 Score = 140 bits (154), Expect = 7e-28 Identities = 278/403 (69%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | |||||||| ||||||||||||||||||||| ||| Sbjct 341129 TCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 341070 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | | |||||| || | | | ||||| || |||||||| | Sbjct 341069 GCGTTGTAGAACTTTTGGTTGCCAAGAGCGAGCAGCAGTCGGTCAGCGACAAACTCAATG 341010 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | || ||||||||| | || ||||| | || || | | Sbjct 341009 TACTGGCACATGAGCTTAGCGTTCATGCCGAGCAGCGCGCAAGGCAGAGCATCGGTCAAG 340950 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTT-CACCTGTGCCAGAGACAG 251801 ||||| | || ||||||| |||||| | | | ||| || ||| | | | | Sbjct 340949 AATTCTTGCTCAATGGCAACGGCCTCCACGATGA-TGCTTTGCACGACCGACTTGGCGGG 340891 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGTCG 251859 |||||||| || | ||| |||| | || || || | || ||||| |||||||| Sbjct 340890 CTTGTTCTTGAGGTGAGAGAACAGCAGGCAAGCGAAGTCAGT--GTGCATGCCCTCGTCA 340833 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||| | ||||||| ||| | ||||| ||| | | |||| Sbjct 340832 CGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTCTTCAACCAG 340773 Query 251920 AAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||||| | ||| || || || ||||| | | |||||||||| Sbjct 340772 AAGATGGACGC-GAATGAGCCGGAGAAGAAGATACCCTCGACA 340731 >seq467 Length=1591857 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||| || || || ||||| || |||||||| || |||| ||||| Sbjct 1118035 CTCTCGTATTGCTGTCATCGGTCCAAACGGTGCTGGCAAGTCTACACTTGTCAACGTCCT 1118094 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGG 280278 |||||| || || || ||| || ||| || | |||| ||||| || || | Sbjct 1118095 GACTGGTGA-ACTCATTCCAACCAGCGGTGATGTCTACCAGCACGAGAACATCCGTATCG 1118153 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||| || || ||||||||| ||| ||||| ||||||| |||| |||||| Sbjct 1118154 CCTACATCAAGCAACACGCTTTCGCCCATATCGATCACCACCTCGACAAGACTCCATCTG 1118213 Query 280339 AATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 | |||||||| ||||| | | || | ||| |||||| ||| | |||| || Sbjct 1118214 AGTACATTCAATGGCG-TTTCCAGACTGGTGAGGATCGTGAGACTATGGACCG 1118265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811185985745