Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq530 179 7e-40 seq455 179 7e-40 seq671 120 6e-22 seq653 116 7e-21 seq638 84.2 4e-11 >seq530 Length=291 Score = 179 bits (198), Expect = 7e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| |||| |||||||| || ||| ||| || |||||||| || || || Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 98 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || |||||||| || ||||| || || | || ||||| ||||| Sbjct 99 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 158 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||||||||| ||||| | |||||| ||||| ||||| ||| || || || Sbjct 159 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTC-GCTCGACTCGAC 217 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 218 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265 >seq455 Length=1194790 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| |||| |||||||| || ||| ||| || |||||||| || || || Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 1130592 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || |||||||| || ||||| || || | || ||||| ||||| Sbjct 1130593 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 1130652 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| ||| ||| ||||||||||| | ||||||||| Sbjct 1130653 ATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACC 1130712 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || ||||| ||||||||||| || ||||| Sbjct 1130713 TCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || || ||||||||||| || || ||| Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || | | || ||||| ||||| Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||||||||| ||||| | |||||| ||||| ||||| ||| || || || Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTC-GCTCGACTCGAC 1130939 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 1130940 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 129 bits (142), Expect = 1e-24 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| |||||||| || || | || || || | ||| Sbjct 1131013 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGC 1131072 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| ||||| | || ||||| || |||||||| |||||||| |||||||| Sbjct 1131073 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTC 1131132 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||||||| ||||||||||| ||| || || || || | |||||| || || || || Sbjct 1131133 GACTTGACGTTGTCGATGGTGTC-GCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 1131191 >seq671 Length=186828 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || || ||||| || ||||| || Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || ||||| || |||||||| |||||||| || ||||| |||||| ||| Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 ||||| || | || || || || | |||||| || || || ||||||||||||||||| Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 53807 >seq653 Length=579839 Score = 116 bits (128), Expect = 7e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || |||||||| || |||||||| || ||| | Sbjct 344582 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 344641 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || ||||| ||||| Sbjct 344642 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 344701 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || || |||||||| |||||||| |||||| ||||||||||| Sbjct 344702 ATTCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTC 344748 >seq638 Length=503197 Score = 84.2 bits (92), Expect = 4e-11 Identities = 228/337 (68%), Gaps = 14/337 (4%) Strand=Plus/Minus Query 176927 GATCTCGAGCAGCGACGGGAACTGTGCATGGAAAAAGTTCAGCACTAGACCAGCAATATG 176986 ||||| ||| ||||| |||||||| | || || ||||| | || || || || || Sbjct 188178 GATCTTGAGTAGCGAGGGGAACTGAACCTGCAAGAAGTTGATCAAAAGTCCCTTGATGTG 188119 Query 176987 TGAGCCGTCAACGTCCTGGTCTGCCATAATAATCACAGACCCGTACCGAAGAGAGGACGC 177046 || || || || || |||| ||| || || | | || || || | | | ||| Sbjct 188118 AGAACCATCGTGATCTTGATCTGTCATGATCATTATATGACCATATCGCAAACCG-ACG- 188061 Query 177047 GTCCTTGTAGTTCACACCAT----TGCGG-AGACCGA-GAATTTGTTTGATGGCAGTAAT 177100 ||| |||| || || || | ||| | ||||||| |||||| || |||| ||| Sbjct 188060 GTCGTTGT-GT--ACTCCTTCTTGTGCTGTAGACCGATGAATTTCTT-GATGTTCTGAAT 188005 Query 177101 CTCGGCGTTGTTAGTAATACTAGACA-CAGACGCATCACGGACATTCAGTAGCTTACCAC 177159 || ||||| || | ||| || | || | || || || || ||||| || | ||||||| Sbjct 188004 TTCCGCGTTCTTCGAAAT-CTGGTCAACGGAGGCGTCGCGAACATTGAGCACTTTACCAC 187946 Query 177160 GGAGGGGGAAAATTCCGTAGCGATCCCGACCCACGACAGCAAGGCCAGCTGTGGCAAGCG 177219 | ||||| |||| ||| || || || | || |||||| | || || || ||| Sbjct 187945 GAAGGGGAAAAACACCGAAGTAGTCTGGATCGACCACAGCACGACCTGCCAACGCCAGCA 187886 Query 177220 TGGCGGCAGAGTCACCCTCTGTCAAAATGAGCGTGCA 177256 |||||| ||||||||||| ||||| ||||| || || Sbjct 187885 AGGCGGCTGAGTCACCCTCAGTCAAGATGAGAGTACA 187849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599993055400