Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq530 179 7e-40
seq455 179 7e-40
seq671 120 6e-22
seq653 116 7e-21
seq638 84.2 4e-11
>seq530
Length=291
Score = 179 bits (198), Expect = 7e-40
Identities = 178/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| ||||| |||| |||||||| || ||| ||| || |||||||| || || ||
Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 98
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | ||||| || |||||||| || ||||| || || | || ||||| |||||
Sbjct 99 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 158
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||| ||||||||||| ||||| | |||||| ||||| ||||| ||| || || ||
Sbjct 159 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTC-GCTCGACTCGAC 217
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||||||||||||||| ||||||||
Sbjct 218 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
>seq455
Length=1194790
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| ||||| |||| |||||||| || ||| ||| || |||||||| || || ||
Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 1130592
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | ||||| || |||||||| || ||||| || || | || ||||| |||||
Sbjct 1130593 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 1130652
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| ||| ||| ||||||||||| | |||||||||
Sbjct 1130653 ATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACC 1130712
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || || || ||||| ||||||||||| || |||||
Sbjct 1130713 TCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
Score = 161 bits (178), Expect = 2e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || || || ||||||||||| || || |||
Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| |||||||| || | | || ||||| |||||
Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||| ||||||||||| ||||| | |||||| ||||| ||||| ||| || || ||
Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTC-GCTCGACTCGAC 1130939
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||||||||||||||| ||||||||
Sbjct 1130940 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 129 bits (142), Expect = 1e-24
Identities = 138/180 (77%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || |||||||| || |||||||| |||||||| || || | || || || | |||
Sbjct 1131013 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGC 1131072
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || ||||| ||||| | || ||||| || |||||||| |||||||| ||||||||
Sbjct 1131073 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTC 1131132
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| ||||||| ||||||||||| ||| || || || || | |||||| || || || ||
Sbjct 1131133 GACTTGACGTTGTCGATGGTGTC-GCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 1131191
>seq671
Length=186828
Score = 120 bits (132), Expect = 6e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| || || | ||||| || || ||||| || ||||| ||
Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | || ||||| || |||||||| |||||||| || ||||| |||||| |||
Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
||||| || | || || || || | |||||| || || || |||||||||||||||||
Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 53807
>seq653
Length=579839
Score = 116 bits (128), Expect = 7e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || |||||||| || |||||||| || ||| |
Sbjct 344582 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 344641
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || | | || ||||| |||||
Sbjct 344642 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 344701
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
|| || |||||||| |||||||| |||||| |||||||||||
Sbjct 344702 ATTCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTC 344748
>seq638
Length=503197
Score = 84.2 bits (92), Expect = 4e-11
Identities = 228/337 (68%), Gaps = 14/337 (4%)
Strand=Plus/Minus
Query 176927 GATCTCGAGCAGCGACGGGAACTGTGCATGGAAAAAGTTCAGCACTAGACCAGCAATATG 176986
||||| ||| ||||| |||||||| | || || ||||| | || || || || ||
Sbjct 188178 GATCTTGAGTAGCGAGGGGAACTGAACCTGCAAGAAGTTGATCAAAAGTCCCTTGATGTG 188119
Query 176987 TGAGCCGTCAACGTCCTGGTCTGCCATAATAATCACAGACCCGTACCGAAGAGAGGACGC 177046
|| || || || || |||| ||| || || | | || || || | | | |||
Sbjct 188118 AGAACCATCGTGATCTTGATCTGTCATGATCATTATATGACCATATCGCAAACCG-ACG- 188061
Query 177047 GTCCTTGTAGTTCACACCAT----TGCGG-AGACCGA-GAATTTGTTTGATGGCAGTAAT 177100
||| |||| || || || | ||| | ||||||| |||||| || |||| |||
Sbjct 188060 GTCGTTGT-GT--ACTCCTTCTTGTGCTGTAGACCGATGAATTTCTT-GATGTTCTGAAT 188005
Query 177101 CTCGGCGTTGTTAGTAATACTAGACA-CAGACGCATCACGGACATTCAGTAGCTTACCAC 177159
|| ||||| || | ||| || | || | || || || || ||||| || | |||||||
Sbjct 188004 TTCCGCGTTCTTCGAAAT-CTGGTCAACGGAGGCGTCGCGAACATTGAGCACTTTACCAC 187946
Query 177160 GGAGGGGGAAAATTCCGTAGCGATCCCGACCCACGACAGCAAGGCCAGCTGTGGCAAGCG 177219
| ||||| |||| ||| || || || | || |||||| | || || || |||
Sbjct 187945 GAAGGGGAAAAACACCGAAGTAGTCTGGATCGACCACAGCACGACCTGCCAACGCCAGCA 187886
Query 177220 TGGCGGCAGAGTCACCCTCTGTCAAAATGAGCGTGCA 177256
|||||| ||||||||||| ||||| ||||| || ||
Sbjct 187885 AGGCGGCTGAGTCACCCTCAGTCAAGATGAGAGTACA 187849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921599993055400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |