Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq680 340 3e-88 seq411 244 2e-59 >seq680 Length=821847 Score = 340 bits (376), Expect = 3e-88 Identities = 592/852 (69%), Gaps = 12/852 (1%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 || ||| ||||||||||||||| || || |||||| ||||| |||||||| ||| Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365 Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | | ||| ||| |||| || ||| || | Sbjct 340366 TCCAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 340425 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || || ||||||||||| || |||||||| ||||| |||||||||| | | Sbjct 340426 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 340485 Query 42477 TTCATGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| |||||||| ||| ||||| || |||||||||||||||||||| || Sbjct 340486 TTCAGCGCCGAGGTGCAAATACCG-GAGGCACGATGCTTCTACGGCTTCCAGATCATGAT 340544 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || || || |||| |||||| || ||| Sbjct 340545 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAGCCCAA 340604 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 |||| | || ||||| ||||| || | || || || ||| | ||||| || Sbjct 340605 GCAGCGAACATACCTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGCTGA 340664 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||||| || |||||| | ||| | || |||| | | || | ||||| Sbjct 340665 CTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATGCGATTGATCGCCTT 340724 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | | || |||||||| ||||||||||| ||| | ||||| |||||||||||| | ||| | Sbjct 340725 TGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGTTGAAGAA 340784 Query 42776 G-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | ||| || ||| | || ||||||||||| ||||| |||||| | | |||||||| Sbjct 340785 GCGTGGTCTC-ATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCA 340843 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | ||||| || ||||| |||||||| ||||||| | |||||||| | ||| Sbjct 340844 TGCACACTGACTTCGCTTGCCTGCTGTTCTC---TCACCTCAAGAACAAGCCCGCCAAGT 340900 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 | || | ||||||| ||||||||| | || ||| | || ||| | || | Sbjct 340901 CGGTCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCGATG 340960 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 | ||||| | ||| ||||||||||| | ||||||||| ||||||| ||| | Sbjct 340961 CTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAGTTTG 341020 Query 43015 TCGCCGACCATCTCCTG-TGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 |||| |||| || ||| | | ||| || | |||||||| | | |||| Sbjct 341021 TCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAG-TTCTACAACGCCACCAACCCC 341079 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 |||||||| |||||||||||||| | | |||||||||||||| ||||||||||| || Sbjct 341080 TTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTT 341139 Query 43134 GCCGACTACCAG 43145 | |||||||||| Sbjct 341140 GGCGACTACCAG 341151 >seq411 Length=240905 Score = 244 bits (270), Expect = 2e-59 Identities = 975/1519 (64%), Gaps = 47/1519 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || || || || ||||| | ||||| || || ||||| |||||| || || Sbjct 125213 GTTGACGACTTGGAATTCTCCGGCAAGCACACGACGAGAGTAGATGTTGCTAGTGTATGG 125154 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| || ||||| ||||||| ||| ||||| ||||| || | || Sbjct 125153 CTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGAGGCAGTAGGCATTGGTGCAAC 125094 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||| || ||| | || |||||| ||| | ||||| ||| ||||||||| Sbjct 125093 CAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGCCTTGAGCGCGTCCCAGTCCCA 125034 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | || |||| ||| ||||||||| || |||| || ||||| Sbjct 125033 GAGGTCTGA-AGGTG--------TGACGCCCCACATCTCGTACTGAAGTTCGCCCTTTGA 124983 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCAGCTTACAGCTCT 244388 || ||| ||||||||| ||| ||| ||||| | ||| | | || | || Sbjct 124982 AACCGGGGAGCCCTCGTACGTCTCGTATGGACCAAGCTTGCTAG-CAAGGTCGCACGATG 124924 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TG 244447 || ||| || |||| ||||||||||||||||||| ||||| || ||||||| || Sbjct 124923 CGGTGAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAGGTGACGGGCCTCTG 124864 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCC-CTGCACGCCGAT 244506 | | || || |||| | || ||| | || || || || ||| || |||| Sbjct 124863 GAG-ACTCAAAAGGCATGCGTAGAGCCAGGAAAGCATCAGCAAGACCGCTG-ACACCGAG 124806 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 ||||| |||||||| ||| ||||| | | || || ||||| ||||| |||| | Sbjct 124805 ACCGATTGGTCTGTGGCGCATGTTGCTCTTCTTCGCCTCAGGCACTGGGTAGTGGTTGAC 124746 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||||| | |||||| | ||| ||||| | | || || ||| ||| || ||| Sbjct 124745 TTCGATGATCTTGTTCAAGTTCTTGGTGACGACTTGCACAACCTCGTGGAGCTTCTCAAA 124686 Query 244627 GTCGTA---CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||| | ||||| | ||| || ||| | | ||| || Sbjct 124685 GTCGAAACGCTCGTTCTCAAGATCGACGTAGGT-------------TGGCAGAGCAAGA- 124640 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 | || | |||||||| ||||| ||||| || | |||||||| | ||||| ||||| Sbjct 124639 GATG-CAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCAGTGCA 124581 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 | ||| | |||||| || || |||| || || ||| |||| |||| || || Sbjct 124580 CAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 124521 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || || || ||||| |||||| | | || | ||||| Sbjct 124520 CTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATACCAGAC 124461 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | ||| ||| ||| || | || ||| |||||||||||||||||| | Sbjct 124460 CTTTTGAGCGCGGACAGTCTCACGTCCACGACCTTCTCTCTCGTAGCGGGTGTACAGCTC 124401 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 |||||||||| || | || || | || || |||||| ||||||||||| | Sbjct 124400 CTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACATGAGTGT 124341 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || || | | | ||| | || |||||| || || |||||||| || || ||| Sbjct 124340 CCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGCGAAGAA 124281 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 || || | | | | || ||| || |||||| | || |||| ||| | Sbjct 124280 CAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAAGGAGAT 124221 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || ||||||| ||||| | ||||| |||| ||||| || ||||||||||| || Sbjct 124220 GACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTTGCCACC 124161 Query 245164 CTGGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||| | | | || || | | ||| ||| ||||| | || | | || | Sbjct 124160 TTGGTCGA----CATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCAT 124105 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACA 245279 | || |||||| ||||| ||||| | || | | | || ||| | | || Sbjct 124104 TGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGGCAGTTCA 124045 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 ||| | || || || | ||| ||||| | |||||| |||| | ||||| || | Sbjct 124044 GGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATAC 123985 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| |||||||| |||||||| || || ||||| || | || ||| | || || Sbjct 123984 CCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGCG 123925 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGT 245459 | | | | ||||||| || || ||||| || ||||| | |||| | | | || Sbjct 123924 TACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAGTTGT 123865 Query 245460 ACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGG 245518 | |||| | || ||||| | |||||||||||| | || ||| | ||||| Sbjct 123864 AGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGAT-TCCAACAGCCACACGCATGATC 123806 Query 245519 GTGTGCTGGGGCGTCTCG--ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGA 245576 ||||||| || ||||| | | || | | ||||| ||| ||||| || | Sbjct 123805 ATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGC--GGAGCAAGTATGAGCGTTCCA 123748 Query 245577 GCGTCTTGAACCCAAAGTA 245595 |||||||||| |||||||| Sbjct 123747 GCGTCTTGAAACCAAAGTA 123729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316240753200