Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq455 140 8e-28 seq530 131 4e-25 seq671 107 5e-18 >seq455 Length=1194790 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | ||| ||||| |||||||| | ||| || || ||||| Sbjct 1130796 TTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAA 1130855 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||||| || |||||| || || || || ||||| || | || || || Sbjct 1130856 GATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 1130915 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| |||||||| || || || || ||||| ||||| ||||| || |||||||| Sbjct 1130916 GTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 1130975 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 1130976 GAAGATCTGCAT 1130987 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || ||||| | || ||||| || || || || || || || Sbjct 1130563 GTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCC 1130622 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TT 288395 ||||||||||| ||||| || |||||| || || || || ||||| || ||| || Sbjct 1130623 GCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTT-GCTCTT 1130681 Query 288396 CACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 |||||| || || | || |||||||| || | ||| |||||||| || || || || Sbjct 1130682 CACGTTGTCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGTCTTGCCTGTGAGTGT 1130741 Query 288456 CTTGACGAATATCTGCAT 288473 ||||||||| || ||||| Sbjct 1130742 CTTGACGAAGATTTGCAT 1130759 >seq530 Length=291 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || ||||| | || ||||| || || || || || || || Sbjct 69 GTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCC 128 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||||||||| ||||| || |||||| || || || || ||||| || | || Sbjct 129 GCGAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTG 188 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || |||| |||||||| || || || || ||||| ||||| ||||| || ||| Sbjct 189 ACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTC 248 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 249 TTGACGAAGATCTGCAT 265 >seq671 Length=186828 Score = 107 bits (118), Expect = 5e-18 Identities = 136/183 (74%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || ||||| ||||| ||||||||| Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 | |||||| || || ||| || || || || |||||||| || ||| || || || Sbjct 53925 AAACGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATT 53870 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||| || || || || ||||| ||||| ||||| || |||||||| Sbjct 53869 GTCGATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGAC 53810 Query 288462 GAA 288464 ||| Sbjct 53809 GAA 53807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625002643710