Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq680 127 5e-24 >seq680 Length=821847 Score = 127 bits (140), Expect = 5e-24 Identities = 542/841 (64%), Gaps = 19/841 (2%) Strand=Plus/Plus Query 242896 ATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTG 242955 || ||| | ||||| |||||||| | |||| | || ||||| |||| || || |||| Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365 Query 242956 AACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 243015 | || || ||||||| | || ||||||||||||||| || |||||| | Sbjct 340366 TCCAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 340425 Query 243016 CACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCA-GACCAA 243074 ||| | || | || ||||| | ||||| || ||||| | || || ||| || | | Sbjct 340426 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 340485 Query 243075 CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAA 243134 || || | || || | || |||||||| || || | | ||| | | | Sbjct 340486 -TTCAGCGCCGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGAT 340544 Query 243135 CGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGAT-GAAC 243193 || ||||| || || ||| | || || |||||| | || |||| | | Sbjct 340545 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACA--TACATCAGCGAGCCC 340602 Query 243194 AAG-AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCA 243252 ||| |||||| | || ||| |||||||||| ||||| || | | | ||||| Sbjct 340603 AAGCAGCGAACATACCTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGAAAGGCT 340662 Query 243253 AAATGGGCTCAGAAGTGG--CTAGAACCCGGTAAATCATTT-GCTGAGCGTCTCGTCGCC 243309 | ||||| | | ||| || | || || | ||| ||| ||| | ||||| Sbjct 340663 GACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATGCGATTGATCGCC 340722 Query 243310 TGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGC 243367 | | ||| || || ||||| | || ||||| ||| ||| ||||||| ||| || Sbjct 340723 TTTGC-TGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTC-GCGTCCATCTTCTGGTTGA 340780 Query 243368 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 243427 ||| ||| | ||| |||||||| | || |||||| ||||| || ||||||| Sbjct 340781 AGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 340840 Query 243428 GCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCG 243487 || | ||| | |||| | || ||| || | ||| ||||||||| | | Sbjct 340841 GCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACAAGCCCGC---CA 340897 Query 243488 AAACGGTCAAACAAATCATCACAG---AAGCAGTTGAAAACGAAAAGGAATTCATTTGCG 243544 | ||||| |||| ||||| | | || |||| | || | |||||| | || Sbjct 340898 AGTCGGTCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCG 340957 Query 243545 ACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAAT 243604 | ||| | || ||| ||| | ||||||||| || | |||||| | |||||||| || | Sbjct 340958 ATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAGT 341017 Query 243605 TCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACC 243664 | || || ||||| | | |||| ||||| | | || | |||||| ||| |||| Sbjct 341018 TTGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAGTTCTACAACGCCACCAACC 341077 Query 243665 CCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTG 243724 |||| | ||| |||||| ||| || || || || || ||||||||||| ||||||| Sbjct 341078 CCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTG 341137 Query 243725 T 243725 | Sbjct 341138 T 341138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852515885750