Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq530 136 4e-27 seq455 118 1e-21 >seq530 Length=291 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 41976 TATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 42035 ||| | ||||| | | ||||| |||||| |||| |||||||||||| || || ||||| Sbjct 33 TATTGCCCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAG 92 Query 42036 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 42095 || | || || || | || || | |||||| || ||||| || || ||||||||||| Sbjct 93 TCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCC 152 Query 42096 GCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 42155 | ||| | || ||||||||| ||| || |||| | | | ||||||||||| Sbjct 153 GGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGAC 212 Query 42156 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 213 TCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265 >seq455 Length=1194790 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 41976 TATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 42035 ||| | ||||| | | ||||| |||||| |||| |||||||||||| || || ||||| Sbjct 1130527 TATTGCCCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAG 1130586 Query 42036 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 42095 || | || || || | || || | |||||| || ||||| || || ||||||||||| Sbjct 1130587 TCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCC 1130646 Query 42096 GCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 42154 | ||| | | ||||||||| ||| || || | ||| | | | ||||| || Sbjct 1130647 GGTGGGATACCCTCCTTGTCTTGGATCTTGCTCTTCA-CGTTGTCGATGGTGTCCGATGA 1130705 Query 42155 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || | ||| || || ||||| || || ||||| || ||||||||||| Sbjct 1130706 TTCTACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || ||| | |||||| || | || |||||||| || ||||| || | Sbjct 1130760 ACCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGA 1130819 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || || ||||| || ||||| || | ||||||||||| | ||| Sbjct 1130820 GAGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 1130879 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||| || |||| | | | ||||||||||| || || Sbjct 1130880 GATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGAC 1130939 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 1130940 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 107 bits (118), Expect = 2e-18 Identities = 129/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| | ||| || || |||| || || ||||| |||||||| Sbjct 1131024 CTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAA 1131083 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||||||| ||| | || | |||| || Sbjct 1131084 AATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 1131141 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | | | |||||||| || ||||| |||| ||||| || ||||| || Sbjct 1131142 TTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 1131191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199593138800