Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq411 187 2e-42 >seq411 Length=240905 Score = 187 bits (206), Expect = 2e-42 Identities = 600/921 (65%), Gaps = 14/921 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| ||||| || ||||| || ||| | ||| || |||||| Sbjct 123720 AACTACCAATACTTTGGTTTCAAGACGCTGGAACGCTCATACTTGCTCCGCATTGATGGC 123779 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| ||||| |||| || || || | ||||| || || | || || |||||| || Sbjct 123780 AAAGTTGCCGAGAGACCACAGCACATGATCATGCGTGTGGCTGTTGGAATCCACGGCGAC 123839 Query 93835 GACAT----GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCAT 93890 || || |||| ||| | || || ||||| | |||| | || Sbjct 123840 GATATCGAGGCCGCCA---TTGAGACCTA-CAACTACATGTCGAACAAATACTTCACACA 123895 Query 93891 GGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT 93950 || | || || ||||||| ||| || || ||| ||||| || |||| || ||| | Sbjct 123896 CGCTTCGCCTACACTGTTCAGCGCTGGTACGCCGAATGCACAGTTGGCTTCATGCTTCTT 123955 Query 93951 GAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 ||| ||| | |||| ||| ||| || || | ||||| || ||| || || | Sbjct 123956 GATCGAC-ATGAAGGATGACAGCATTGAGGGTATCTACGACACACTGAAGACTTGCGCCA 124014 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 ||||| || | || || || || || | | |||| | | ||||| | || | Sbjct 124015 TGATCTCGAAGAATGCTGGTGGTATTGGCCTGAACTGCCACAAGATCCGTGCTACTGGAT 124074 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | ||||| || || || ||||| ||||| || ||| |||| ||| | || |||| || Sbjct 124075 CATACATTGCAGGCACAAACGGCACATCCAATGGTCTCATCCCGATGTTGCGCGTCTACA 124134 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 | ||| | || ||||| || ||||| ||||| | | | || | ||||| ||| Sbjct 124135 ATAACACTGCCCGCTATGTCGACCAAGGTGGCAACAAGCGTCCTGGCGCGTTCGCCATCT 124194 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| |||||||| || || | ||||| ||||| || ||||||||||| | Sbjct 124195 ACCTAGAGCCATGGCACGCAGATGTCATCTCCTTCATGGACCTCCGCAAGAACCACGGAA 124254 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | | | || | || || |||| |||||| ||| | ||||| || || |||| Sbjct 124255 AGGAGGAAGTGCGTGCACGTGATCTGTTCTTCGCTCTTTGGATCCCAGATCTGTTCATGA 124314 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || ||||| ||| | | |||| || | || |||||||| || || || || Sbjct 124315 AGCGTGTCGAAGCCAACGCAGAATGGACACTCATGTGCCCCAATGAGTGCCCTGGTCTCG 124374 Query 94370 CCGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAA 94427 | || || | || | || || || || |||| | || ||||| | | ||| | Sbjct 124375 CTGATGTGTACGG-TGACGAGTTCGAGGAGCTGTACACCCGCTACGAGAGAGAAGGTCGT 124433 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 || | | || | | ||| ||| | ||| || ||| |||| | ||| || Sbjct 124434 GGAC-GTGAGACTGTCCGCGCTCAAAAGGTCTGGTATGCTATCTTGGAAGCCCAGACTGA 124492 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 ||| ||| || | ||| | | |||||| ||| |||| |||| ||||||| || | Sbjct 124493 GACTGGTGGACCTTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAA 124552 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 |||||| ||||||||| || || ||||||| ||||| | ||||| || | || || Sbjct 124553 CCTCGGAACGATCAAGAGTTCCAACTTGTGCACTGAGATCATTGAGTACACCGCACCAGA 124612 Query 94608 CGAGATTGCTGTGTGTAACCT 94628 |||| | || ||||| ||||| Sbjct 124613 CGAGGTCGCCGTGTGCAACCT 124633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711172042200