Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq680 141 9e-29 seq455 98.7 1e-15 >seq680 Length=821847 Score = 141 bits (156), Expect = 9e-29 Identities = 341/511 (67%), Gaps = 25/511 (5%) Strand=Plus/Plus Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAG 52397 |||| ||||||| | |||||| || |||||| | | | | | || | || | Sbjct 340651 CGCAGAAAGGCTGACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATG 340710 Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 || || | ||||| || |||||||| | || || |||||| || || ||||| Sbjct 340711 CGATTGATCGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATC 340770 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | | || | | || | ||| | ||||| || ||| ||||||| | || || Sbjct 340771 TTCTGGTTGAAGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCC 340830 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCT--------CT-ACTACAAGACGCGC 52568 || ||||| || ||||||| ||||| || ||||| || || ||||| | Sbjct 340831 CGTGACGAGGGCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAA---C 340887 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628 | ||| || | || ||| || ||||| || |||||| || || || Sbjct 340888 AAGCCCGCCAAGTCGG--TCGTGCAA-------AGCATCATCGTGGAGGCCGTTGCCATT 340938 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || | || || || || | || ||||| || |||||| ||||||||||| || | Sbjct 340939 GAGCAAGAATTCTTGACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTC 340998 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCC-AA 52746 |||||| ||||||| |||||||| || || || ||| || | |||| |||| || || Sbjct 340999 ATGTGCCAGTACATTGAGTTTGTCGCTGACCGACTGCTGCT--CGCTCTTGGCAACCAAA 341056 Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 ||| || |||||| ||| || || || || ||| | ||||| || || | ||||||| Sbjct 341057 AGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGA 341116 Query 52807 CCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||| ||||||||||| || ||||| || Sbjct 341117 CCAACTTCTTCGAGAAGCGTGTTGGCGACTA 341147 >seq455 Length=1194790 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || |||||||| ||| | Sbjct 1130989 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 1131048 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||||||| || || | | || |||||||| ||||||||||| Sbjct 1131049 AGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1131108 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||||||| | ||||||| Sbjct 1131109 ATGCCCTCCTTGTC-CTGAATCTTCGACTTGACGTTG-TCGATGGTGTCGCTAGACTCCA 1131166 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||||| || | || || || |||| Sbjct 1131167 CCTCGAGGGTGATAGTCTTGCCGGTCA 1131193 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || || || | | || |||||||| ||||||||||| Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| |||||||| || |||| |||| | ||||| |||||||| || Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| ||||||| || Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTG-TCGATAGTGTCGCTCGACTCGAC 1130939 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || || || |||||||| Sbjct 1130940 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250334620400