Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq680 141 9e-29
seq455 98.7 1e-15
>seq680
Length=821847
Score = 141 bits (156), Expect = 9e-29
Identities = 341/511 (67%), Gaps = 25/511 (5%)
Strand=Plus/Plus
Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAG 52397
|||| ||||||| | |||||| || |||||| | | | | | || | || |
Sbjct 340651 CGCAGAAAGGCTGACTGGGCACTGCGATGGATCTCGGACAAGGACTCTACTTTCGCTATG 340710
Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457
|| || | ||||| || |||||||| | || || |||||| || || |||||
Sbjct 340711 CGATTGATCGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATC 340770
Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517
|| | | || | | || | ||| | ||||| || ||| ||||||| | || ||
Sbjct 340771 TTCTGGTTGAAGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCC 340830
Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCT--------CT-ACTACAAGACGCGC 52568
|| ||||| || ||||||| ||||| || ||||| || || ||||| |
Sbjct 340831 CGTGACGAGGGCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAA---C 340887
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628
| ||| || | || ||| || ||||| || |||||| || || ||
Sbjct 340888 AAGCCCGCCAAGTCGG--TCGTGCAA-------AGCATCATCGTGGAGGCCGTTGCCATT 340938
Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688
|| | || || || || | || ||||| || |||||| ||||||||||| || |
Sbjct 340939 GAGCAAGAATTCTTGACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTC 340998
Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCC-AA 52746
|||||| ||||||| |||||||| || || || ||| || | |||| |||| || ||
Sbjct 340999 ATGTGCCAGTACATTGAGTTTGTCGCTGACCGACTGCTGCT--CGCTCTTGGCAACCAAA 341056
Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806
||| || |||||| ||| || || || || ||| | ||||| || || | |||||||
Sbjct 341057 AGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGA 341116
Query 52807 CCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||| ||||||||||| || ||||| ||
Sbjct 341117 CCAACTTCTTCGAGAAGCGTGTTGGCGACTA 341147
>seq455
Length=1194790
Score = 98.7 bits (108), Expect = 1e-15
Identities = 148/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || | ||| | | | |||||||| || |||||||| ||| |
Sbjct 1130989 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 1131048
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| |||||||||||| || || | | || |||||||| |||||||||||
Sbjct 1131049 AGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1131108
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | ||||||| | |||||||
Sbjct 1131109 ATGCCCTCCTTGTC-CTGAATCTTCGACTTGACGTTG-TCGATGGTGTCGCTAGACTCCA 1131166
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592
|||||| || | || || || ||||
Sbjct 1131167 CCTCGAGGGTGATAGTCTTGCCGGTCA 1131193
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | ||| | || || || | | || |||||||| |||||||||||
Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||| |||||||| || |||| |||| | ||||| |||||||| ||
Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||| ||||||| ||
Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTG-TCGATAGTGTCGCTCGACTCGAC 1130939
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || || || || || || ||||||||
Sbjct 1130940 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496250334620400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |