Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq680 132 5e-26 seq455 98.7 9e-16 seq671 93.3 4e-14 seq530 93.3 4e-14 seq653 86.0 6e-12 >seq680 Length=821847 Score = 132 bits (146), Expect = 5e-26 Identities = 305/451 (68%), Gaps = 25/451 (6%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 || |||||||| || || |||||||| |||||||||| ||| || ||| | || Sbjct 340711 CGATTGATCGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATC 340770 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | |||| | || | ||| | |||||||| || ||||||||| ||||| Sbjct 340771 TTCTGGTTGAAGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCC 340830 Query 47259 AGAGACGAAGGCCTGCACACCAACTT----TGCCTG----TCTCT-ACTACAACACTAGA 47309 | ||||| ||| ||||||| |||| |||||| ||||| || ||| | | | Sbjct 340831 CGTGACGAGGGCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACA-A 340889 Query 47310 GTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATT 47369 | | ||| || || ||||| | | ||| || || || ||||| |||||| Sbjct 340890 GCCCGCCAA--GTCGGTCGTGCAAAGCATCATCG-------TG--GAGGCCGTTGCCATT 340938 Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429 ||| || || || |||| |||||||| | | | || |||||||| || | Sbjct 340939 GAGCAAGAATTCTTGACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTC 340998 Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAG 47489 ||| | ||||||| || |||||||| ||||| ||||| | || ||| | |||| Sbjct 340999 ATGTGCCAGTACATTGAGTTTGTCGCTGACCGACTGCT-GCTC-GCTCTTGGCAACCAAA 341056 Query 47490 ATTT--ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGA 47547 | || || || || || || ||||| || ||| | ||||| || |||| ||||||| Sbjct 341057 AGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGA 341116 Query 47548 CCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||| ||||||||||| || ||||| || Sbjct 341117 CCAACTTCTTCGAGAAGCGTGTTGGCGACTA 341147 >seq455 Length=1194790 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | |||||| || | || || || ||||| || ||||| || Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || || ||| ||||||| |||||||| || || || Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||||| | |||| ||||| | |||||| Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 1130940 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| || || || || || |||||||| Sbjct 1130941 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| || || || || || || || || ||| Sbjct 1131019 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGCTTGCCA 1131078 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| || ||||| ||||||||||||||| || ||| |||| Sbjct 1131079 GCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 1131138 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| |||| |||||| || ||| || |||| ||| | || |||||||||| Sbjct 1131139 ACGTTG-TCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCA 1131193 Score = 82.4 bits (90), Expect = 7e-11 Identities = 173/253 (68%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 126862 AATCATCACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGA 126921 |||||||| || |||| ||| || || || | |||| |||||| || | || Sbjct 1130511 AATCATCAAAATGCTCTAT--TGC-CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCT 1130567 Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || | |||||| ||| || | ||| || || ||| | Sbjct 1130568 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1130627 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||||| |||||||| || || || || ||||||||||| ||| || ||| | ||| Sbjct 1130628 GATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTT 1130687 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||||| || || || | || | ||| ||||| || || || || | Sbjct 1130688 G-TCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGA 1130746 Query 127101 CAAAAATCTGCAT 127113 | || || ||||| Sbjct 1130747 CGAAGATTTGCAT 1130759 >seq671 Length=186828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || | || ||||||||| ||||| Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | ||| |||| ||| || || | ||| | || |||||||| || || || || || Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 53807 >seq530 Length=291 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 126862 AATCATCACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGA 126921 |||||||| || |||| ||| || || || | |||| |||||| || | || Sbjct 17 AATCATCAAAATGCTCTAT--TGC-CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCT 73 Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || | |||||| ||| || | ||| || || ||| | Sbjct 74 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 133 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||||| || || || |||||||||||||| ||| || ||||| | Sbjct 134 GATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 193 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||||| | |||||| || | || | || |||||||| || || || || Sbjct 194 GTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 253 Query 127102 AAAAATCTGCAT 127113 || |||||||| Sbjct 254 GAAGATCTGCAT 265 >seq653 Length=579839 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| Sbjct 344582 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 344641 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| ||||||| |||||||| || || || Sbjct 344642 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 344701 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 || |||||||||||| || || ||||| | |||| |||||| Sbjct 344702 ATTCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTC 344748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489239386800