Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq680 132 5e-26
seq455 98.7 9e-16
seq671 93.3 4e-14
seq530 93.3 4e-14
seq653 86.0 6e-12
>seq680
Length=821847
Score = 132 bits (146), Expect = 5e-26
Identities = 305/451 (68%), Gaps = 25/451 (6%)
Strand=Plus/Plus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
|| |||||||| || || |||||||| |||||||||| ||| || ||| | ||
Sbjct 340711 CGATTGATCGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATC 340770
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | |||| | || | ||| | |||||||| || ||||||||| |||||
Sbjct 340771 TTCTGGTTGAAGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCC 340830
Query 47259 AGAGACGAAGGCCTGCACACCAACTT----TGCCTG----TCTCT-ACTACAACACTAGA 47309
| ||||| ||| ||||||| |||| |||||| ||||| || ||| | | |
Sbjct 340831 CGTGACGAGGGCATGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACA-A 340889
Query 47310 GTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATT 47369
| | ||| || || ||||| | | ||| || || || ||||| ||||||
Sbjct 340890 GCCCGCCAA--GTCGGTCGTGCAAAGCATCATCG-------TG--GAGGCCGTTGCCATT 340938
Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429
||| || || || |||| |||||||| | | | || |||||||| || |
Sbjct 340939 GAGCAAGAATTCTTGACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTC 340998
Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAG 47489
||| | ||||||| || |||||||| ||||| ||||| | || ||| | ||||
Sbjct 340999 ATGTGCCAGTACATTGAGTTTGTCGCTGACCGACTGCT-GCTC-GCTCTTGGCAACCAAA 341056
Query 47490 ATTT--ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGA 47547
| || || || || || || ||||| || ||| | ||||| || |||| |||||||
Sbjct 341057 AGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGA 341116
Query 47548 CCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
||||||| ||||||||||| || ||||| ||
Sbjct 341117 CCAACTTCTTCGAGAAGCGTGTTGGCGACTA 341147
>seq455
Length=1194790
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| |||| || | |||||| || | || || || ||||| || ||||| ||
Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || || || || || ||| ||||||| |||||||| || || ||
Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|||||||||||||| ||| || ||||| | |||| ||||| | ||||||
Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACC 1130940
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || |||||||| || || || || || ||||||||
Sbjct 1130941 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/176 (73%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| || || || || || || || || |||
Sbjct 1131019 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCGAGTTGCTTGCCA 1131078
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | |||||||| || ||||| ||||||||||||||| || ||| ||||
Sbjct 1131079 GCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 1131138
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| |||| |||||| || ||| || |||| ||| | || ||||||||||
Sbjct 1131139 ACGTTG-TCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCA 1131193
Score = 82.4 bits (90), Expect = 7e-11
Identities = 173/253 (68%), Gaps = 5/253 (2%)
Strand=Plus/Plus
Query 126862 AATCATCACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGA 126921
|||||||| || |||| ||| || || || | |||| |||||| || | ||
Sbjct 1130511 AATCATCAAAATGCTCTAT--TGC-CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCT 1130567
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| || | |||||| ||| || | ||| || || ||| |
Sbjct 1130568 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1130627
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
||||| |||||||| || || || || ||||||||||| ||| || ||| | |||
Sbjct 1130628 GATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTT 1130687
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| |||| |||||||| || || || | || | ||| ||||| || || || || |
Sbjct 1130688 G-TCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGA 1130746
Query 127101 CAAAAATCTGCAT 127113
| || || |||||
Sbjct 1130747 CGAAGATTTGCAT 1130759
>seq671
Length=186828
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || ||||| ||| || | || ||||||||| |||||
Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||| |||| ||| || || | ||| | || |||||||| || || || || ||
Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 53807
>seq530
Length=291
Score = 93.3 bits (102), Expect = 4e-14
Identities = 173/252 (69%), Gaps = 3/252 (1%)
Strand=Plus/Plus
Query 126862 AATCATCACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGA 126921
|||||||| || |||| ||| || || || | |||| |||||| || | ||
Sbjct 17 AATCATCAAAATGCTCTAT--TGC-CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCT 73
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| || | |||||| ||| || | ||| || || ||| |
Sbjct 74 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 133
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041
||||| |||||||| || || || |||||||||||||| ||| || ||||| |
Sbjct 134 GATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 193
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|||| ||||| | |||||| || | || | || |||||||| || || || ||
Sbjct 194 GTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 253
Query 127102 AAAAATCTGCAT 127113
|| ||||||||
Sbjct 254 GAAGATCTGCAT 265
>seq653
Length=579839
Score = 86.0 bits (94), Expect = 6e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||||
Sbjct 344582 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 344641
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || || ||| ||||||| |||||||| || || ||
Sbjct 344642 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 344701
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053
|| |||||||||||| || || ||||| | |||| ||||||
Sbjct 344702 ATTCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTC 344748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475489239386800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |