Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq530 87.8 2e-12 seq455 82.4 7e-11 >seq530 Length=291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || ||| | ||||| || ||||| ||||| || || || || Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 96 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | || ||| ||||| || || || ||| | |||| || ||||||||||| | Sbjct 97 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 156 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || ||||| || || |||| || | |||||| ||||||| Sbjct 157 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGA 216 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | || |||||||| || || || || || || ||||| Sbjct 217 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265 >seq455 Length=1194790 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || ||| | ||||| || ||||| ||||| || || || || Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC--TG 1130590 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | || ||| ||||| || || || ||| | |||| || ||||||||||| | Sbjct 1130591 ATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTG 1130650 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | || || || || ||||| || || || | || | || | |||||| || || || Sbjct 1130651 GGATACCCTCCTTGTCTTGGATCTTGCTCTTCA-CGTTGTCGATGGTGTCCGATGATTCT 1130709 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||| ||||| || || || || || || |||||||| Sbjct 1130710 ACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || || || || || | ||| Sbjct 1130785 TGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCTTCGAGTTGC 1130844 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || ||||||||||| || ||||| || || ||||| || || Sbjct 1130845 TTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 1130904 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| |||||||| || ||||| | || |||||||| Sbjct 1130905 GACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTG 1130964 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 1130965 AGGGTCTTGACGAAGATCTGCAT 1130987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| ||||| || |||||| Sbjct 1130986 ATACCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCG 1131045 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| || || ||| | || | || ||||||||||| Sbjct 1131046 GACAGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGA 1131105 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || ||||| || |||| || | || | ||||||| |||||| Sbjct 1131106 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCGATGGTGTCGCTAGACTC 1131164 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 || ||||| || | || |||||||| Sbjct 1131165 CACCTCGAGGGTGATAGTCTTGCCGGT 1131191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992210672200