Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq411 159 4e-34 seq680 114 2e-20 seq638 91.5 2e-13 >seq411 Length=240905 Score = 159 bits (176), Expect = 4e-34 Identities = 1123/1787 (63%), Gaps = 63/1787 (4%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || | | ||| | || |||||||||||||| || ||||| || | Sbjct 125550 TGAACTGAATCGGAGCAGACGCGGCTTGTGTACGGAGGTAGTACATGCCGGTCTTCAGGC 125491 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT-TCCATG 115644 | |||||||| || | ||||| || | |||| | || ||| || | || | Sbjct 125490 CAAGCTTCCAGCCAGTAAAGTGCATGCTGGTGATCTTGCCCA-TGGTGGGCTCCTTCAAG 125432 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| ||||||||||||||| || || ||||| ||||| | || Sbjct 125431 TGGATGTTCAAGCTTTGAGATTGATCGATGAAGGCACCGCGGTCCGCGGCCATTTGAA-- 125374 Query 115705 ACATCCTTCATCT---TGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 || || || |||||||||| ||||| |||| | ||| | || || || Sbjct 125373 -CAATGTTGCGCTGACTGATTTCCCAGACAGTCTTGTACAACGCCTTGAGGTCGTCCGGA 125315 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 || | | || ||| | || || || | || ||| | | |||||| | || Sbjct 125314 ATGTTCGGAATGCGTTGCACGGAACCGCCGTCGGCGATGATGCGGTTCTTCATGTTCTCA 125255 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| | ||| | |||||||| || | | | | ||||| || || Sbjct 125254 GACCACAATCCACGGTCGACGAGATCCTTCAGCAACCATGGG----TTGACGACTTGGAA 125199 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCAT 115936 || || || || || | ||| ||||||||| | ||||||||||| |||||||| | Sbjct 125198 TTCTCCGGCAAGCACACGACG-AGAGTAGATGTTGCTAGTGTATGGCTCGAAGCACTCGT 125140 Query 115937 TGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGC 115996 || |||| ||| || | ||||||||| || ||||| ||||| | |||||| ||||| Sbjct 125139 TGAAGCCCATGATCTGCGATGTGGAGGCAGTAGGCATTGGTGCAACCAGAAGGGAGTTGC 125080 Query 115997 GGAGACCCACCCCCCTAATGCGTTC-----CTTGAGGGCGTCCCAGTCGTAGTTGAGCTT 116051 ||| |||| || | ||| || |||||| ||||||||||| || || | Sbjct 125079 GGA----CACCGTGCTGA-GCGATCTTGGCCTTGAGCGCGTCCCAGTCCCAG---AGGTC 125028 Query 116052 TG----TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCT 116107 || | | | | ||||||| || |||| || || | || | || || |||| Sbjct 125027 TGAAGGTGTGACGC-CCCACATCTCGTACTGAAGTTCGCCCTTTGAAACCGGGGAGCCCT 124969 Query 116108 CAAATGTCTCATATGGGCCCTCAACCTCC--GCCAATTCGGAGCTCGCCTCGAGGGCTGC 116165 | | ||||| ||||| || | | | | || | ||| | || ||| || || Sbjct 124968 CGTACGTCTCGTATGGACCA--AGCTTGCTAGCAAGGTCGCACGATGCGGTGAGCGCAGC 124911 Query 116166 GTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACG 116224 ||| || || ||||| || || | | |||| || | |||||| || ||||| | Sbjct 124910 GTGGTAGATGGTCTCGAAGATCTGGACGTTCAGGTGACG-GGCCTCTGGAGACTCAAAAG 124852 Query 116225 CGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGAT 116284 | || | || |||| || ||||| ||||||||| || ||||| | | Sbjct 124851 GCATGCGTAGAGCCAGGAAAGCATCAGCAAGACCGCTGACACCGAGACCGATTGGTCTGT 124792 Query 116285 GTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCC 116341 | | ||| || ||| || ||| ||| || || || ||||| | | Sbjct 124791 GGCGCATGTTGCTCTTCTTCGC---CTCAGGCACTGGGTAGTGGTTGACTTCGATGATCT 124735 Query 116342 TATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC 116401 | || | || |||||||| || | | || || ||||| || | || |||| || Sbjct 124734 TGTTCAAGTTCTTGGTGACGACTTGCACAACCTCGTGGAGCTTCTCAAAGTCGAAAC-GC 124676 Query 116402 GAGT-CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTC 116460 || ||| || ||| || | || || || | || || || || ||||| | | | Sbjct 124675 TCGTTCTCAAGATCGACGTAGGTTGGCAGAGCAAGAGATGCAAGGTTGCACACGGCGACC 124616 Query 116461 TCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCC 116520 || || | |||||||| || || || || ||||| || |||||||| || || || Sbjct 124615 TCGTCTGGTGCGGTGTACTCAATGATCTCAGTGCACAAGTTGGAACTCTTGATCGTTCCG 124556 Query 116521 AAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCC 116580 | |||||| || || ||| ||| ||||||||||||||||| | || || Sbjct 124555 AGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAAGGTCCACCA 124496 Query 116581 GTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG 116640 ||||| || |||| | | ||||| | ||| || | || | ||||| | Sbjct 124495 GTCTCAGTCTGGGCTTCCAAGATAGCATACCAGACCTTTTGAGCGCGGACAGTCTCACGT 124436 Query 116641 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC-CACAGCCTC 116699 | || || || |||||| ||||| || |||| ||||| ||||| ||| | || Sbjct 124435 CCACGACCTTCTCTCTCGTAGCGGGTGTACAGCTCCTCGAACTCGTCACCGTACA-CATC 124377 Query 116700 TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 116759 | ||| || || || || || || | ||| | ||||| | | || || || Sbjct 124376 AGCGAGACCAGGGCACTCATTGGGGCACATGAGTGTCCATTCTGCGTTGGCTTCGACACG 124317 Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 116819 ||||||||| || ||||||||||| || || |||| ||||| || || |||| || Sbjct 124316 CTTCATGAACAGATCTGGGATCCAAAGAGCGAAGAACAGATCACGTGCACGCACTTCCTC 124257 Query 116820 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 116879 | || || || || | |||| ||| |||| ||| |||||||| || || || Sbjct 124256 CTTTCCGTGGTTCTTGCGGAGGTCCATGAAGGAGATGACATCTGCGTGCCATGGCTCTAG 124197 Query 116880 GTACACCGCGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGT 116933 ||| | |||| | || |||| ||| | |||| ||||| | || || Sbjct 124196 GTAGATGGCGAACGCGCCAGGACGCTTG---TTGCCACCTTGGTCGACATAGCGGGCAGT 124140 Query 116934 TGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT 116993 || | ||||| | ||| || |||| ||||| ||| ||| ||||| || ||| Sbjct 124139 GTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGATGTGCCGTTTGTGCCTGCAAT 124080 Query 116994 ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGA 117053 || | || | || | |||| || || |||||||| || || ||| || Sbjct 124079 GTATGATCCAGTAGCACGGATCTTGTGGCAGTTCAGGCCAATACCACCAGCATTCTTCGA 124020 Query 117054 GATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGC 117113 ||| ||||| | | || || ||||||| || || || |||| |||| | | Sbjct 124019 GATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTCAATGCTGTCATCCTTCATGTC 123960 Query 117114 GATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGT 117173 ||| | |||||| | || |||| | || ||||||||| |||| || || || | Sbjct 123959 GATCAAGAAGCATGAAGCCAACTGTGCATTCGGCGTACCAGCGCTGAACAGTGTAGGCGA 123900 Query 117174 CGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGT 117232 ||||| |||| || | | ||||| | | ||||||||| | | | | || | Sbjct 123899 AGCGTGTGTGAA-GTATTTGTTCGACATGTAGTTGTAGGTCTCAATGGCGGCCTCGATAT 123841 Query 117233 CTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 | || ||||| || || | | || ||||| | ||||| || ||| Sbjct 123840 CGTCGCCGTGGATTCCAACAGCCACACGCATGATCATGTGCTGTGGT 123794 >seq680 Length=821847 Score = 114 bits (126), Expect = 2e-20 Identities = 284/428 (66%), Gaps = 20/428 (5%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || |||| ||| |||||||| Sbjct 341148 GTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCAT 341089 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA-AATTGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 || || || ||||| | | ||| | || | |||| || | | || || | Sbjct 341088 GAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAAGAGCGAGC-AGCAGTC 341030 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | ||| |||||||||||| |||| || || |||||| |||| || | Sbjct 341029 GGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGCAGCGCGC 340970 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || || || || | ||| | | ||||||| | || || ||| |||||| Sbjct 340969 AAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTCC---ACGATG---- 340917 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG----- 127520 || | | ||| | | | | | |||||| |||| | ||| Sbjct 340916 --ATGCTTTGCACGACCGACTTGGCGGGCTTGTTCTTGAGGTGAGAGAACAGCAGGCAAG 340859 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||| | |||||||||||||||||||| || || |||||| || || | Sbjct 340858 CGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAG 340799 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||||| ||||||||||||||||| || | |||||||| ||||||||||| | Sbjct 340798 CCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAGATAC 340739 Query 127641 CCTCCACA 127648 |||| ||| Sbjct 340738 CCTCGACA 340731 >seq638 Length=503197 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 177654 TCATATTGTTGTTCCATTTCTGTGTGTAACACTGCTTTGTCTCCCCATCCTTGATCACGA 177713 |||| || ||| |||| |||| |||| | |||||| |||| ||| || | | Sbjct 187069 TCATGTTCTTGCGCCATGTCTGCTTGTAGCGCTGCTTGGTCTTTGAGTCCACAGTCTCCA 187010 Query 177714 TGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAA 177773 | || || | ||||||||||| || | || |||||||| || || || |||||| Sbjct 187009 GGTGGAATTCAGTCGAGTAGATGTTGGTGAGTTTTGCACCGTATCCGTTTCGCCCACCAG 186950 Query 177774 CAATTCTCTTCTTGTT-GTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGGTAAGT 177832 | | | | ||| || ||| |||||||| | | || ||||| || |||||| | | Sbjct 186949 TGACTTT-TGCTTCTTCGTCGTCGTAGTTGGAAGATGTCAGAAGATGCCCAAAGATCATC 186891 Query 177833 TCTGGATTCCAAATACCCTCCTTTTCGTGCAT 177864 |||||| |||| ||||||||||| |||||||| Sbjct 186890 TCTGGAATCCAGATACCCTCCTTCTCGTGCAT 186859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492284106200