Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq411 102 1e-16 >seq411 Length=240905 Score = 102 bits (112), Expect = 1e-16 Identities = 422/647 (65%), Gaps = 24/647 (4%) Strand=Plus/Minus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCC-GTACATGTGCATGGAAGACAG 203943 || ||||||||||||||||| ||||| || ||| || ||| | ||||||| | | Sbjct 125515 AGGTAGTACATGCCGGTCTTCAGGCCAAGCTTCCAGCCAGTAAA-GTGCATGCTGGTGAT 125457 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| || | |||| || || ||| ||||||| || ||| |||||||| || Sbjct 125456 CTTGCCCATGGTGGGCTCCTTCAAGTGGATGTTCAAGCTTTGAGATTGATCGATGAA-GG 125398 Query 204004 CGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGA 204062 | || || || |||||||| | | |||| | ||| || ||||| || |||||| Sbjct 125397 CACCGCGGTCCGCGGCCATTTGAACAATGTTGCGCTGACTGATTTCCCAGACAGTCTTGT 125338 Query 204063 ACA-CGTCTCTGGTGTGTTGAGGCACATCTTCCCA---CGTCCTGATCG-AGCCGTTGTC 204117 ||| || || || || | || | | ||| | ||| || || | ||| ||| Sbjct 125337 ACAACGCCT-TGAGGTCGTCCGGAA--TGTTCGGAATGCGT--TGCACGGAACCGCCGTC 125283 Query 204118 GGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCAC 204177 ||| || | | || || | | ||| ||||| || || || ||| || Sbjct 125282 GGCGATGATGCGGTTCTTCATGTTCTCAGACCACAATCCACGGTCGACGAGATCCTTCAG 125223 Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237 || ||||||| || || || ||||||| ||||| | || | | | | |||| | Sbjct 125222 CAACCATGGGTTGACGACTTGGAATTCTCCGGCAAGCACACGACGAGAGTAGATGTTGCT 125163 Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 ||| |||| ||||| ||||||| ||| | ||||| | ||| ||| || ||||| Sbjct 125162 AGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGAGGCAGTAGGCAT 125103 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 || || | || ||||||||||| ||||||| | || | || ||| || | | Sbjct 125102 TGGTGCAACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGCCTTGAGCGCGTC 125043 Query 204358 CCAGTCGTGCATCGCACTG--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCC--TT 204413 |||||| || | ||| ||| | ||||||||||| ||| |||||| ||| || Sbjct 125042 CCAGTC--CCAGAGGTCTGAAGGTGTGACGCCCCACATCTCGTACTGAAGTTCGCCCTTT 124985 Query 204414 GACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCT-GCCAGCTTGCAC 204472 || || ||| ||||| ||||||| || || | || | || || || | |||| Sbjct 124984 GA--AACCGGGGAGCCCTCGTACGTCTCGTATGGACCAAGCT-TGCTAGCAAGGTCGCAC 124928 Query 204473 GAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 || |||| | || | ||| |||||||| |||||||| ||||| Sbjct 124927 GATGCGGTGAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTT 124881 Score = 95.1 bits (104), Expect = 2e-14 Identities = 405/629 (64%), Gaps = 12/629 (2%) Strand=Plus/Minus Query 205070 GTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGA 205129 ||||||||| || | || || ||||||||| || || || || || | ||||| Sbjct 124411 GTGTACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGG 124352 Query 205130 CACATCAGAGACCACATCTGA-TCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCA 205188 ||||| || | ||| |||| | | ||| || | || ||| ||||| || |||||| Sbjct 124351 CACATGAGTGTCCAT-TCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCA 124293 Query 205189 CAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTC 205248 || || | ||||||||||| || | | | | || | ||| ||||||| | ||| Sbjct 124292 AAGAGCGAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTC 124233 Query 205249 CAGCCAAGCCGCAATG---TCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGG 205305 || ||| | ||| || |||||||| ||||||| | | ||| | ||||| || Sbjct 124232 CA-TGAAG--GAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGG 124176 Query 205306 CCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGG 205365 | |||||| ||||| ||||| || ||| | | ||| | || |||| |||||| Sbjct 124175 ACGCTTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGG 124116 Query 205366 CACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTT 205425 | ||||| |||| || ||||| |||| ||| || || ||| | | || Sbjct 124115 GATGAGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTT 124056 Query 205426 GGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC-ACTCTTGCAGAG 205484 | | | | |||||| || |||| | ||| | |||| ||||| | |||| ||| | Sbjct 124055 GTGGCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTT-CAGTG 123997 Query 205485 TGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGAAGCCAGC 205543 || |||||| || | ||| || ||| || |||| | || |||| ||||||| | Sbjct 123996 TGTCGTAGATACCCTCAATGCTGTCATCCTTCA-TGTCGATCAAGAAGCATGAAGCCAAC 123938 Query 205544 TTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCG 205603 | ||| || || ||| ||| || || || ||||| ||||| || | Sbjct 123937 TGTGCATTCGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTC 123878 Query 205604 CTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCG 205663 || | |||||||||| | || ||| | |||| |||||| || || | || Sbjct 123877 GACATGTAGTTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCC 123818 Query 205664 ATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | | ||||| | ||| || |||||||| Sbjct 123817 ACACGCATGATCATGTGCTGTGGTCTCTC 123789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795135867789200