Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq680 282 4e-71 seq455 125 7e-24 seq530 123 2e-23 seq653 89.7 5e-13 seq671 82.4 8e-11 >seq680 Length=821847 Score = 282 bits (312), Expect = 4e-71 Identities = 589/860 (68%), Gaps = 27/860 (3%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || || | | || ||| | Sbjct 341153 TTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTC 341094 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT--GGTGCCGATCAGGTCGACGA 132721 ||| || || |||||||||| | ||||||| ||| ||| | | || ||| | Sbjct 341093 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAAGAG--CGAGCA 341036 Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGC 132780 |||| | ||| || || ||||| ||||| || ||||| | || || | | | || ||| Sbjct 341035 GCAGTCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATG-CCGAGC 340977 Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTC---GGT 132836 || |||| ||||| || ||||| | || |||||| ||||| || || || | | Sbjct 340976 AGCGCGCAA-GGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTCCACGAT 340918 Query 132837 GACGATTTCC-CTAACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAG 132894 || | ||| | | | || | | || ||| | | ||| | || ||||| || | Sbjct 340917 GATGCTTTGCACGACCGACTTGGCGGGCTTGTTC-TTG----AGGTGAGAGAACAGCAGG 340863 Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||| ||||| |||| ||||||||| | ||| ||||| |||||| ||| || | | Sbjct 340862 CAAGCGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGG 340803 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || | |||||| || || || || | ||| || |||| ||||| ||| || |||||| Sbjct 340802 CCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAG 340743 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||| || || || || | || ||| |||| || | || ||| | | Sbjct 340742 ATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAGAGTCCTTGTCCGAG 340683 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||||| ||||| ||||| || |||||| || || || || | ||||||||||| Sbjct 340682 ATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTG 340623 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192 | | | | | ||| || | || ||| | ||| |||||||||||| || || Sbjct 340622 A--AGAGGTATGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATG 340565 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 | || ||||| | ||||||||| ||| || |||||||| ||||| || ||||| | Sbjct 340564 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGTA 340505 Query 133253 CCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 ||||| || | || ||| ||||||||||| || |||||||| ||||||||| ||| Sbjct 340504 TTTGCACCTC-GGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGATGCG 340446 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCC 133368 ||||| || || || ||||| |||||| |||||||| ||| || | ||| | | Sbjct 340445 GCGAAGAATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGCTTGTTC 340386 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 |||||| | ||||||||||| || | ||| ||| | ||||| || || |||||||| Sbjct 340385 CAGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAGAATGATGCCTCGGCC 340326 Query 133429 TTTTTGTACATACTCCACAT 133448 || |||||||| |||| || Sbjct 340325 TTCTTGTACATGTTCCATAT 340306 >seq455 Length=1194790 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | | | Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| || || | ||||| Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| || || || |||| ||||| ||| ||||||||| Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| || || |||||||| ||| | |||| || Sbjct 1130807 ATCCAAAAGGAATCGACTCTCCACTTGGTGCTTCGTCTACGAGGTGG 1130761 Score = 116 bits (128), Expect = 4e-21 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || || || | || || || | | Sbjct 1130759 ATGCAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCG 1130700 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| ||||| || || | |||| Sbjct 1130699 GACACCATCGACAACG--TGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACC 1130642 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||||||||| ||| |||| || | ||||| || ||||||| Sbjct 1130641 AGCAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACA 1130582 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| ||| || ||||| |||||||||||| Sbjct 1130581 ACATCCAGAAGGAGAGC-ACACTGCACTTGGTGCTGCGT 1130544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| || |||||| |||| || ||| | | ||||| | | | |||| | || Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGCGACACCATCGACAACG-TCAAGTC 1131133 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| ||||| ||||| | ||||| ||||| ||||||| ||| ||||| Sbjct 1131132 GAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAA 1131073 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || || || |||| || ||||| ||| ||||||||||| ||||| | || || || Sbjct 1131072 GCAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTCCA 1131013 Query 38447 TTTGGTGCTGCGT 38459 | | || || ||| Sbjct 1131012 TCTCGTCCTCCGT 1131000 >seq530 Length=291 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | | | Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| || || | ||||| Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| ||| || ||||| |||||||||||| Sbjct 85 ATCCAGAAGGAGAGC-ACACTGCACTTGGTGCTGCGT 50 >seq653 Length=579839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| || | ||||| ||||| | || | ||| ||||| ||||| || Sbjct 344715 GACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 344656 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| |||| ||||||||||||||| ||||| | || || || ||||| || Sbjct 344655 GATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTC 344596 Query 38457 CG 38458 || Sbjct 344595 CG 344594 >seq671 Length=186828 Score = 82.4 bits (90), Expect = 8e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||| ||||| || |||||| | || || ||| | | || | | | Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||| |||||| | ||||| ||||| Sbjct 53867 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTT 53924 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || || |||| || | ||||| || ||||||||||||||| | Sbjct 53925 TGATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGA 53984 Query 38431 AGG 38433 ||| Sbjct 53985 AGG 53987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160639548800