Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq680 282 4e-71
seq455 125 7e-24
seq530 123 2e-23
seq653 89.7 5e-13
seq671 82.4 8e-11
>seq680
Length=821847
Score = 282 bits (312), Expect = 4e-71
Identities = 589/860 (68%), Gaps = 27/860 (3%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || ||||| || || || || || || | | || ||| |
Sbjct 341153 TTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTC 341094
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT--GGTGCCGATCAGGTCGACGA 132721
||| || || |||||||||| | ||||||| ||| ||| | | || ||| |
Sbjct 341093 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAAGAG--CGAGCA 341036
Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGC 132780
|||| | ||| || || ||||| ||||| || ||||| | || || | | | || |||
Sbjct 341035 GCAGTCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATG-CCGAGC 340977
Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTC---GGT 132836
|| |||| ||||| || ||||| | || |||||| ||||| || || || | |
Sbjct 340976 AGCGCGCAA-GGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTCCACGAT 340918
Query 132837 GACGATTTCC-CTAACG-CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAG 132894
|| | ||| | | | || | | || ||| | | ||| | || ||||| || |
Sbjct 340917 GATGCTTTGCACGACCGACTTGGCGGGCTTGTTC-TTG----AGGTGAGAGAACAGCAGG 340863
Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954
||||| ||||| |||| ||||||||| | ||| ||||| |||||| ||| || | |
Sbjct 340862 CAAGCGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGG 340803
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|| | |||||| || || || || | ||| || |||| ||||| ||| || ||||||
Sbjct 340802 CCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAG 340743
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| |||||||| || || || || | || ||| |||| || | || ||| | |
Sbjct 340742 ATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAGAGTCCTTGTCCGAG 340683
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134
||||| ||||| ||||| || |||||| || || || || | |||||||||||
Sbjct 340682 ATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTG 340623
Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192
| | | | | ||| || | || ||| | ||| |||||||||||| || ||
Sbjct 340622 A--AGAGGTATGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATG 340565
Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252
| || ||||| | ||||||||| ||| || |||||||| ||||| || ||||| |
Sbjct 340564 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGTA 340505
Query 133253 CCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311
||||| || | || ||| ||||||||||| || |||||||| ||||||||| |||
Sbjct 340504 TTTGCACCTC-GGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGATGCG 340446
Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCC 133368
||||| || || || ||||| |||||| |||||||| ||| || | ||| | |
Sbjct 340445 GCGAAGAATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGCTTGTTC 340386
Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428
|||||| | ||||||||||| || | ||| ||| | ||||| || || ||||||||
Sbjct 340385 CAGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAGAATGATGCCTCGGCC 340326
Query 133429 TTTTTGTACATACTCCACAT 133448
|| |||||||| |||| ||
Sbjct 340325 TTCTTGTACATGTTCCATAT 340306
>seq455
Length=1194790
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | | |
Sbjct 1130987 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 1130928
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || |||| ||||| ||||| || || | |||||
Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| || || || |||| ||||| ||| |||||||||
Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||||||| |||| || || |||||||| ||| | |||| ||
Sbjct 1130807 ATCCAAAAGGAATCGACTCTCCACTTGGTGCTTCGTCTACGAGGTGG 1130761
Score = 116 bits (128), Expect = 4e-21
Identities = 161/219 (74%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| || || || | || || || | |
Sbjct 1130759 ATGCAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCG 1130700
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | |||| | |||| || |||| ||||| ||||| || || | ||||
Sbjct 1130699 GACACCATCGACAACG--TGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACC 1130642
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | ||||||||| ||| |||| || | ||||| || |||||||
Sbjct 1130641 AGCAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACA 1130582
Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| ||||| ||| || ||||| ||||||||||||
Sbjct 1130581 ACATCCAGAAGGAGAGC-ACACTGCACTTGGTGCTGCGT 1130544
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| || |||||| |||| || ||| | | ||||| | | | |||| | ||
Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGCGACACCATCGACAACG-TCAAGTC 1131133
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| || | ||||| ||||| ||||| | ||||| ||||| ||||||| ||| |||||
Sbjct 1131132 GAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAA 1131073
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| || || |||| || ||||| ||| ||||||||||| ||||| | || || ||
Sbjct 1131072 GCAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTCCA 1131013
Query 38447 TTTGGTGCTGCGT 38459
| | || || |||
Sbjct 1131012 TCTCGTCCTCCGT 1131000
>seq530
Length=291
Score = 123 bits (136), Expect = 2e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | | |
Sbjct 265 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 206
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || |||| ||||| ||||| || || | |||||
Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||||||||| ||| |||| || | ||||| || |||||||||
Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| ||| || ||||| ||||||||||||
Sbjct 85 ATCCAGAAGGAGAGC-ACACTGCACTTGGTGCTGCGT 50
>seq653
Length=579839
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| |||||||| || | ||||| ||||| | || | ||| ||||| ||||| ||
Sbjct 344715 GACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 344656
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | ||||| |||| ||||||||||||||| ||||| | || || || ||||| ||
Sbjct 344655 GATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTC 344596
Query 38457 CG 38458
||
Sbjct 344595 CG 344594
>seq671
Length=186828
Score = 82.4 bits (90), Expect = 8e-11
Identities = 130/183 (71%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||| ||||| || |||||| | || || ||| | | || | | |
Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| ||||| |||||| | ||||| |||||
Sbjct 53867 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTT 53924
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || || |||| || | ||||| || ||||||||||||||| |
Sbjct 53925 TGATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGA 53984
Query 38431 AGG 38433
|||
Sbjct 53985 AGG 53987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500160639548800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |