Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq411 152 6e-32 seq680 109 6e-19 >seq411 Length=240905 Score = 152 bits (168), Expect = 6e-32 Identities = 566/878 (64%), Gaps = 17/878 (2%) Strand=Plus/Minus Query 106444 ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATC 106503 || ||| || |||| || || | ||||| | ||||| || || ||| || | Sbjct 124664 ATCGACGTAGGTTGGCAGAGCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGC 124605 Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 |||||||| | || || || ||||||||||||||||| ||||| || | ||||| || Sbjct 124604 GGTGTACTCAATGATCTCAGTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTG 124545 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||||| |||| |||||||||||||||||| | || || ||||| ||||| Sbjct 124544 GTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTG 124485 Query 106624 TGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 106683 | | | || || | ||| || | || | ||| | | | || || || Sbjct 124484 GGCTTCCAAGATAGCATACCAGACCTTTTGAGCGCGGACAGTCTCACGTCCACGACCTTC 124425 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 106743 |||||| ||||| || | || ||||| ||||| | | || | |||||| || Sbjct 124424 TCTCTCGTAGCGGGTGTACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGG 124365 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAG 106803 || | || || | || | ||||| | | || || ||||||||||| || Sbjct 124364 GCACTCATTGGGGCACATGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAG 124305 Query 106804 GTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGT 106862 ||||| ||||| || | | || ||||| | | ||| | | || || | || |||| Sbjct 124304 ATCTGGGATCCAAAGAGCGAAGAACAGATCACGTGCACGCA-CTTCCTCCTTTCCGTGGT 124246 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | || | || | ||| |||| ||| |||||||||||||| || |||| |||| Sbjct 124245 TCTTGCGGAGGTCCATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGA 124186 Query 106923 TAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 106976 | || ||||| ||| |||| | |||||||| || ||| || | | Sbjct 124185 ACGCGCCAG---GACGCTTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGA 124129 Query 106977 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 107036 |||| | ||| || || | ||||| ||| || ||||| || ||| ||| | Sbjct 124128 CGCGCAACATCGGGATGAGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAG 124069 Query 107037 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGC 107094 | || | | | ||| || || |||||||| ||||| ||| ||||| | |||| Sbjct 124068 TAGCACGGATCTTGTGGCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGC 124009 Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 | | || | || || | |||||||| | || ||| ||||| || |||| | ||| Sbjct 124008 A-AGTCT-TCAGTGTGTCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAA 123951 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 ||| | || ||| | | || |||||||| |||| || || || | ||||| | Sbjct 123950 GCATGAAGCCAACTGTGCATTCGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGT 123891 Query 107215 GAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 ||| || | | ||||| | || ||| ||||| | | | | || || || || |||| Sbjct 123890 GAAG-TATTTGTTCGACATGTAGTTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGT 123832 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 |||| || | ||||||||||| | ||||| || ||| Sbjct 123831 GGATTCCAACAGCCACACGCATGATCATGTGCTGTGGT 123794 >seq680 Length=821847 Score = 109 bits (120), Expect = 6e-19 Identities = 292/439 (67%), Gaps = 22/439 (5%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 341147 TAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATG 341088 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA----TGGGTGGCACCCCAACTTGTTTGAGGAG 117101 ||||| || || || | ||||| | | | ||| || ||| || || Sbjct 341087 AAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGC----CAAGAGCGAGCAGCAG 341032 Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 || || | ||| |||||||||||| | |||| || || |||||| |||| || Sbjct 341031 TCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGCAGCGC 340972 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-- 117219 || || || || || | ||| ||| |||||| |||| ||||| ||||||| Sbjct 340971 GCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTC---CACGATGAT 340915 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA-AGAGCTCCACG---GC 117275 || | | | | | || || | | | || || ||| | || | || Sbjct 340914 GCTTTGCACGACCGACTTGGCGGGCTTGTTCTTGAGGT---GAGAGAACAGCAGGCAAGC 340858 Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335 || || ||| | ||||| || ||||| || || || || |||||| ||||| | Sbjct 340857 GAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGC 340798 Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 117394 ||||||||| |||||||||||||| | || | ||| |||||| |||||||||||||||| Sbjct 340797 CATGAGACCACGCTTCTTCAACCAGAAGATGGACGC-GAATGAGCCGGAGAAGAAGATAC 340739 Query 117395 CCTCCACACACGCAAACGC 117413 |||| ||| ||||| || Sbjct 340738 CCTCGACAGCAGCAAAGGC 340720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966456091800