Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq680 250 5e-61 seq411 174 3e-38 >seq680 Length=821847 Score = 250 bits (276), Expect = 5e-61 Identities = 571/852 (67%), Gaps = 12/852 (1%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 341151 CTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTC 341092 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||||| | ||| || | | | ||| | |||||| Sbjct 341091 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAAGAGCGAGCAGCAG 341032 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || ||||| |||| ||||| | ||||||| | ||||||||| | || | Sbjct 341031 TCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGCAGCGC 340972 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||| ||| | || | || || | ||| || ||||| ||| | | || | Sbjct 340971 GCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTCCACGATGAT--G 340914 Query 48079 CTTAACGCGG--GACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 ||| | || |||| | ||| ||||| ||||| | | |||| ||| || Sbjct 340913 CTTTGCACGACCGACTTGGCGGGCTTGTTCTTGAGGTGAGAGA---ACAGCAGGCAAGCG 340857 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| |||||| ||| ||||| ||| ||||||| ||||||||||| ||| |||| | Sbjct 340856 AAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGCC 340797 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || || | |||||| || | |||||| ||||| ||||||||||| ||| Sbjct 340796 ATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAGATACCC 340737 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || || || ||| | | | | |||||| || || |||||| |||||||| Sbjct 340736 TCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAGAGTCCTTGTCCGAGATCCAT 340677 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376 || |||||||| ||||| | ||| || || || | || ||||| |||||| Sbjct 340676 CGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTGAAGAGG 340617 Query 48377 TTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGA 48435 | | | || | || | ||| | || || || || | ||| |||| || Sbjct 340616 TATGTTCGCT-GCTTGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGA 340558 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | ||||| || ||||||||| ||||||||| | ||||| | ||||| Sbjct 340557 GTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGTATTTGCAC 340498 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 || | | ||||| ||| | ||| ||||| ||||| || || || || || || ||||| Sbjct 340497 CTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGATGCGGCGAAGAA 340438 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG-AGC--ATTCCAGCCCTG 48612 |||||||| ||| | ||| |||||||| || |||| || |||||| | || Sbjct 340437 TGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGCTTGTTCCAGTCGTG 340378 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | || ||| ||| || | ||||| |||||||||| || || || || ||||| Sbjct 340377 GAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAGAATGATGCCTCGGCCTTCTTGTA 340318 Query 48673 CATGCCCCATAT 48684 |||| |||||| Sbjct 340317 CATGTTCCATAT 340306 >seq411 Length=240905 Score = 174 bits (192), Expect = 3e-38 Identities = 963/1520 (63%), Gaps = 57/1520 (4%) Strand=Plus/Minus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | ||||| || || | ||||| | | ||| | ||| |||||| Sbjct 125215 GGGTTGACGACTTGGAATTCTCCGGCAAGCACACGACGAGAGTAGATGTTGCTAGTGTAT 125156 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||| |||| ||||| | ||| ||| || ||||| || || Sbjct 125155 GGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGAGGCAGTAGGCATTGGTGCA 125096 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 ||||| || ||| | || ||||||| |||| | | ||| | |||||||| Sbjct 125095 ACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGCCTTGAGCGCGTCCCAGTCC 125036 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT-GCCTTT 213145 || | | || |||| | ||| |||||| || |||| ||| | ||| || Sbjct 125035 CAGAGGTCTGA-AGGTG--------TGACGCCCCACATCTCGTACTG-AAGTTCGCCCTT 124986 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 || ||| ||||| ||| | ||| || ||| ||| | || || ||||| || Sbjct 124985 TGAAACCGGGGAGCCCTCGTACGTCTCGTATGGACCAAGCTTGCTAGCAAGGTCGCACGA 124926 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || ||||||| ||||||||| || || |||| ||| || | |||||| Sbjct 124925 TGCGGTGAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAGGTGACGGGCCTC 124866 Query 213266 TGGGGACGTGAAGGGCAT-CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 ||| ||| || ||||| | | || |||| ||||||| || || ||| |||| Sbjct 124865 TGGAGACTCAAAAGGCATGCGTAGAGCCA-GGAAAGCATCAGCAAGACCGCTGACACCGA 124807 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 ||||| |||||||| | || ||| ||| ||| || ||||| |||| Sbjct 124806 GACCGATTGGTCTGTGGCGCATGTTGCTCTTCTTCGCCTCAGGCACTGGGTAGTGGTTGA 124747 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 |||||||||||||| | ||| |||| | |||| || | | || | ||| Sbjct 124746 CTTCGATGATCTTGTTCAAGTTCTTGGTGACGACTTGCACAACCTCGTGGAGCTTCTCAA 124687 Query 213445 GATTGAACACGTAGCCCCCGTCCTGCACAA--ACTCAGG----CAGGGCGATGCTGGCCA 213498 | ||| ||| | ||| || | | || ||| ||| || | || | Sbjct 124686 AGTCGAA-ACG-----CTCGTTCTCAAGATCGACGTAGGTTGGCAGAGCAAGAGATGCAA 124633 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 ||||||| ||||| ||||| | | | |||||||| |||||||| ||||||| |||| Sbjct 124632 GGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCAGTGCACAAGTTGG 124573 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGA 213618 | ||| || || ||||||| ||||| ||| |||||||| ||||||||||| Sbjct 124572 AACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGA 124513 Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGG 213678 ||||| | || || ||||| ||||| ||| || ||||| ||| Sbjct 124512 GCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATACCAGA----CCTT- 124458 Query 213679 CCTTGACCAC---CCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCG 213734 |||| | | | | || || | || | | | |||||| | ||| ||||| Sbjct 124457 --TTGAGCGCGGACAGTCTCACGTCCACGACCTTCTCTCTCGTAGCGGGTGTACAGCTCC 124400 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 | ||| |||| || | || | || || || || ||| |||||||| || Sbjct 124399 TCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACATGAGTGTC 124340 Query 213795 CAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 || || ||| || ||| | || ||||||||| || |||| ||| || ||| |||| Sbjct 124339 CATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGCGAAGAAC 124280 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || || | | | | || ||| ||| ||| ||||| || || | ||| | | Sbjct 124279 AGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAAGGAGATG 124220 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCC 213971 | || |||||||| ||||| | ||||||||| || ||||| || | |||| || || Sbjct 124219 ACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTTGCCACCT 124160 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 ||||| || | ||| | ||| ||| ||||| | || | || || ||||| Sbjct 124159 TGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGA- 124101 Query 214032 TGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGG-AG---A 214086 ||| ||||| || || || || || || || | || | | ||| ||| || | Sbjct 124100 TGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTG----TGGCAGTTCA 124045 Query 214087 GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGC 214146 | || || ||||| || | ||| |||||||||||||| | ||| || || ||| | Sbjct 124044 GGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATAC 123985 Query 214147 CGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACG 214206 | | ||||||||||| | | || | ||||||||| | | ||| | | | || Sbjct 123984 CCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGCG 123925 Query 214207 AGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGT 214266 |||| | |||| || || || || || | | | ||||| || | | ||| Sbjct 123924 TACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAGTTGT 123865 Query 214267 AGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGC 214325 ||||||| | | | | ||| |||| |||||| | ||| ||| | ||| | | Sbjct 123864 AGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGC-CACACGCATGATC 123806 Query 214326 ATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT---GAGCAGGTAGGAGCGCTCC 214382 |||||||| || ||||| || ||||| | | ||||| ||| ||||| ||| Sbjct 123805 ATGTGCTGTGGTCTCTC---GGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCGTTCC 123749 Query 214383 AGAGTCTTGAACCCAAAGTA 214402 || |||||||| |||||||| Sbjct 123748 AGCGTCTTGAAACCAAAGTA 123729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510152108800