Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq411 259 9e-64 seq680 188 1e-42 >seq411 Length=240905 Score = 259 bits (286), Expect = 9e-64 Identities = 980/1511 (65%), Gaps = 49/1511 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCG---GCCTGGGCGCAAGACTGCG-TCAG 221421 || ||||||| |||||| ||||| || | | || || |||| || |||| | || Sbjct 124972 CCCTCGTACGTCTCGTATGGACCA---AGCTTGCTAGCAAGGTCGCACGA-TGCGGTGAG 124917 Query 221422 GGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGT 221481 |||||||||||||||||||| |||||| ||| || |||||| ||||| Sbjct 124916 CGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAGGTGACGGGCCTCTGGAGACTC 124857 Query 221482 GAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCC-CTGTACTCCGATACCGATGG 221540 || ||||| || || | | || | || || || || ||| || |||| |||||| | Sbjct 124856 AAAAGGCATGCGTAGAGCCAGGAAAGCATCAGCAAGACCGCTG-ACACCGAGACCGATTG 124798 Query 221541 GCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | ||||| | | ||||| ||| || ||||| || || |||||| ||||| | Sbjct 124797 GTCTGTGGCGCATGTTGCTCTTCTTCGCCTCAGGCACTGGGTAGTGGTTGACTTCGATGA 124738 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 ||||| | |||| |||| ||||| || |||||| ||||||| Sbjct 124737 TCTTGTTCAAGTTCTTGGTGACGACTTGCACAACCTCGTGGAGCTTCT------------ 124690 Query 221661 CCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGT 221720 | || ||| | |||| | || || | | || |||| || |||| Sbjct 124689 CAAAGTCGAAACGCTCGTTCTCAAGATCGACGTAGGTTGGCAGAGCAAGAGATGCAAGGT 124630 Query 221721 TACACACGGCCACCTCGTCCTTGTT-GGTATACTGTATGATCTCTGTACAGAGGTTGCTG 221779 | |||||||| |||||||| | || ||| |||| |||||||| || || | |||| Sbjct 124629 TGCACACGGCGACCTCGTC-TGGTGCGGTGTACTCAATGATCTCAGTGCACAAGTTGGAA 124571 Query 221780 CACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGC 221839 | |||||| || || |||| || || || |||||| |||||||| |||||||||||| Sbjct 124570 CTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGC 124511 Query 221840 ATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCG 221899 || || || || |||||||| ||| || ||| || | ||||| | | ||| Sbjct 124510 ATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCATACCAGACCTTTTGAGCG 124451 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCGGTATAGAGCATGTCAAA 221958 | || ||| || | | | ||| ||| | || || | ||| || ||| || || Sbjct 124450 CGGACAGTC-TCACGTCCACGACCT---TCTCTCTCGTAGCGGGTGTACAGCTCCTCGAA 124395 Query 221959 CTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTG 222018 || ||||||||| | || | || || || ||| ||| ||||| || |||| | Sbjct 124394 CTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACATGAGTGTCCATTC 124335 Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 |||| ||| ||| | || |||||| || || |||||||| || || || ||||| Sbjct 124334 TGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGCGAAGAACAGATC 124275 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 | | ||| |||||| |||| ||| || | || |||| || | | || Sbjct 124274 ACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAAGGAGATGACATC 124215 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATC 222198 |||||||| ||||| || |||| ||| | ||||| || |||||||||||||| || || Sbjct 124214 TGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTTGCCACCTTGGTC 124155 Query 222199 CACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 | ||| ||| | ||| ||| ||| | |||| | || || |||||| | Sbjct 124154 GA-CATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGATGTGC 124096 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATA 222316 |||| ||||| |||||| | || || | | || |||||| || ||| ||| Sbjct 124095 CGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTT-GTGGCAGTTCAGGCCAATA 124037 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 ||||| || | ||||||||||||||||| |||| || ||||| ||| ||||| || Sbjct 124036 CCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTCAATG 123977 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG-ATTTGGTGGAACAGGC 222435 ||| ||||| | || | || || || || | || ||| | ||| || | | || || Sbjct 123976 CTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGCGTACCA-GC 123918 Query 222436 GTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 | | ||||| || || |||||||| ||||| | ||||| | ||| ||||| Sbjct 123917 GCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAGTTGTAGGTCTC 123858 Query 222496 TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA--TGGCGCATCTCATGTACATGTAC 222553 | | | |||| | ||| ||||| || | || | | || | |||| ||||| | Sbjct 123857 AATGGCGGCCTCGATATCGTCGCCGTGGAT-TCCAACAGCCACA-CGCATGATCATGTGC 123800 Query 222554 TGGGGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAGGTACGATTTTTCCAGAGTCT 222611 || || ||||| || || | | | || ||||| ||| || |||||| |||| Sbjct 123799 TGTGGTCTCTCGGCA--ACTTTGCCATCAATGCGGAGCAAGTATGAGCGTTCCAGCGTCT 123742 Query 222612 TGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC-- 222669 |||| |||||||| | | || || |||||| | | || | ||| | || || ||| Sbjct 123741 TGAAACCAAAGTATTGGTAGTTGAAATCTCTGTCATAGACAATGGCAGAGTTCAACTCGT 123682 Query 222670 CGACTTG-TGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGTTCTCTT 222728 | | || | | | ||| | || | | | || || | | || | || || Sbjct 123681 CTGCGTGTTCCATCACG---ACCTTGTATGTGTAGTCTGAGATCATAGGCGATGCCTTTT 123625 Query 222729 TGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAACGTGTCGGGAG 222788 || | | ||||| || | ||||||||| | | | | || |||||||| | | Sbjct 123624 TGTTCTTTGGGTTGACATAGTGGTACAGGTCCGAGACCACAGCAGAGAACTGCTTTTTCG 123565 Query 222789 TCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGTCAGGGTGCA 222848 |||||||||| || || || |||||||| || | || | ||| | ||||| ||||| Sbjct 123564 TCTGCTTGTGGAGGTTGGAGACGGCGATACGTGCGGCGAGGATGGCGTAGTCTGGGTGTG 123505 Query 222849 CGGTGGTCATG 222859 |||||||||| Sbjct 123504 TGGTGGTCATG 123494 >seq680 Length=821847 Score = 188 bits (208), Expect = 1e-42 Identities = 562/859 (65%), Gaps = 28/859 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||||||||| | ||| |||||| |||||||||||||||||| Sbjct 340306 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 340365 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 ||||||| | ||| |||| || | | ||| ||||| ||| || ||| | Sbjct 340366 TCCAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 340425 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || || || || || || |||||||| ||| |||| || Sbjct 340426 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 340485 Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || |||| | ||| |||||| || |||||||| |||||||| || Sbjct 340486 TTCAGCGCCGAGGTGCAAATAC-CGGAGGCACGATGCTTCTACGGCTTCCAGATCATGAT 340544 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 || || | ||||| ||| || || || || || || ||||| ||| || Sbjct 340545 GGAGAACATCCACTCCGAGACATACTCC---CTCCTCATCGACACATACAT--CAG-CGA 340598 Query 25770 CGCCGAG-AGAGATC--GGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || || || || | || || |||||||| |||| || | ||| || || Sbjct 340599 GCCCAAGCAGCGAACATACCTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAGAAA 340658 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGA-GCGGCTGG 25885 ||| ||||| || |||||| | || | |||| ||| || | ||| || Sbjct 340659 GGCTGACTGGGCACTGCGATGGATCTCGGACAAGGACTCTAC-TTTCGCTATGCGATTGA 340717 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 | |||||||||||||| ||||| ||||| ||| ||| || || ||| ||||||||||| Sbjct 340718 TCGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTGGT 340777 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 | ||| || || |||| | || || ||| ||||||||||||||| | | |||| Sbjct 340778 TGAAGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACG 340837 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 |||| | |||| || || || |||||||| | | | ||| | |||| || Sbjct 340838 AGGGCATGCACACTGACTTCGCTTGCCTGCTGTTCTC---TCACCTCAAGAACAAGCCCG 340894 Query 26066 CTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 | |||| | ||| | || |||||| ||||| || | || ||| | || || Sbjct 340895 C-CAAGTCGGTCGTGCAAAGCATCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTG 340953 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | ||||||||| | |||||| |||| |||||| Sbjct 340954 ACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATT 341013 Query 26185 GAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC-- 26242 |||| ||| || |||| |||||| | || || | | |||||| |||| Sbjct 341014 GAGTTTGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAGTTCTACA--ACGCCA 341071 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||| |||||||| ||||| ||||| || | | || |||||||||||||| || | Sbjct 341072 CCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGA 341131 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | || |||||||| || Sbjct 341132 AGCGTGTTGGCGACTACCA 341150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822217460800