Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq679 114 4e-20
seq638 87.8 5e-12
>seq679
Length=230803
Score = 114 bits (126), Expect = 4e-20
Identities = 117/150 (78%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || |||||||||||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 199555 TGAGCAATGGTCATACGACTGGGAATAGCGTGGGGGTTGATGATGATGTCGGGCGTGAGA 199496
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
|| || || |||| ||||| |||| | || ||| || | || || || ||||| ||
Sbjct 199495 CCGTCCGCGCTGAACGGCATGTCCTCCT-GTCGGTAAGTGATACCGATTGTACCCTTCTG 199437
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||| ||| ||||||||||| ||
Sbjct 199436 TCCGTGACGGGAAGCAAACTTATCACCGAT 199407
Score = 105 bits (116), Expect = 2e-17
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| |||||||| | | || | ||||||| | |||| || || ||||| || ||
Sbjct 199987 ATCAGACCACAGATCTCGCAAATGTGGACGCGGAAAGCGTCTGAGACGTCAAGAAGACGC 199928
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | |||||||||||| |||||||| || ||||||
Sbjct 199927 TCCTTCAAGAATGCCGAAGCACCGTGGGCAATCATACAATCGCGCTCCATCTCTCCGAAA 199868
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574
||||| |||||||| ||||| | ||| || | ||||| || ||||||
Sbjct 199867 CGAAGTCCACCATCTCGAGCACGACCTTCCACGGGCTGGCGTGTGAGA 199820
>seq638
Length=503197
Score = 87.8 bits (96), Expect = 5e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 302563 ATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTT 302622
||||| || || |||| | ||| | | |||||||||||| || || ||| || ||
Sbjct 463520 ATCATGATCTCCTCCAGAGCCTTCACGAGACGACGCTGAATGTATCCGGTTTCAGCGGTC 463579
Query 302623 TTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCC 302682
|| ||||| ||||| || ||||| ||||||||||||| || |||||||| | ||| |
Sbjct 463580 TTGACAGCAGTATCGATCAGACCCTCACGACCACCCATTGCGTGGAAGAAGAACTCCTGA 463639
Query 302683 GGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACC 302720
||| || || | || | ||| |||| ||||| ||
Sbjct 463640 GGTGTGAGACCGCGAAGGTAAGAGTTCTCGACGAATCC 463677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471780921845465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |