Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq680 159 4e-33 seq674 138 1e-26 seq411 89.7 6e-12 seq444 87.8 2e-11 >seq680 Length=821847 Score = 159 bits (176), Expect = 4e-33 Identities = 229/318 (72%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || ||| |||||| |||||||||||||| |||| ||||| Sbjct 341156 GCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATG 341097 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | |||||| ||||| | || |||||| | Sbjct 341096 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAAGAGCGA-G 341038 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 341037 C-AGCAGTCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGA 340979 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||||| ||||| | ||| ||| || |||| ||| || | |||||||| |||| Sbjct 340978 GCAGCGCGCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTCCACGA 340919 Query 868929 TGATCTGCCTGGGCACGTCGGCC---GAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985 |||| || ||||| | | | | ||||||||| ||| | | | ||||||| Sbjct 340918 TGAT---GCTTTGCACGACCGACTTGGCGGGCTTGTTCTTGAGGTGAGAGAACAGCAGGC 340862 Query 868986 AGGCAAAGTCGCAGTGCA 869003 | || ||||| ||||| Sbjct 340861 AAGCGAAGTCAGTGTGCA 340844 Score = 122 bits (134), Expect = 1e-21 Identities = 179/253 (71%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | | ||| Sbjct 340559 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGTATTTGC 340500 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || ||||||||||| || ||||||||| |||||||| Sbjct 340499 ACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGATGCGGCGAAG 340440 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||| ||| |||||||||||| ||| || ||||| | Sbjct 340439 AATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGCTTGTTCCAGTCG 340380 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||| ||||| ||||||| || ||||||||||| ||| Sbjct 340379 TGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAGAATGATGCCTCGGCCTTCTTG 340320 Query 869870 TACATCTCCCATA 869882 ||||| | ||||| Sbjct 340319 TACATGTTCCATA 340307 Score = 98.7 bits (108), Expect = 1e-14 Identities = 201/291 (69%), Gaps = 17/291 (6%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| |||||| | |||||| || |||||| Sbjct 340841 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTC 340782 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||| ||||||| ||| ||| ||| ||||| ||||| |||||||| || ||||| Sbjct 340781 TTCAACCAGAAGATGGACGC-GAATGAGCCGGAGAAGAAGATACCCTCGACAGCAGCAAA 340723 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGC 869355 | |||| | ||| || || || ||| ||||||| |||||| || || Sbjct 340722 GGCGATCAATCGCATAGCGAAAGTA--GAG----TCCTTGTCCGAGATCCATCGCAGTGC 340669 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG--TGGTC- 869412 |||||| |||||| | | | | || | ||||||||||| |||||| || || Sbjct 340668 CCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTGAAGAGGTATGTTCG 340609 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || | | || || ||| || |||||||| ||||| || || ||||| Sbjct 340608 CTGCTTG---GGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTC 340561 >seq674 Length=224942 Score = 138 bits (152), Expect = 1e-26 Identities = 99/114 (87%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239 |||||||| || |||||| | ||||| ||| | |||||||| | || |||||| ||||| Sbjct 46000 ATCCTCGCAGCGAACTACATGGACATTAAGGCACTGCTCGACGTCGGCTGCAAGACTGTG 45941 Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 45940 GCCAACATGATCAAGGGCAAGTCGCCAGAGGAGATCCGAAAGACCTTCAACATC 45887 >seq411 Length=240905 Score = 89.7 bits (98), Expect = 6e-12 Identities = 175/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| ||||| || |||| || ||||||| | ||| || | ||| || ||||| Sbjct 124159 TGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGAT 124100 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| ||||| || | ||| | || | || || | |||||| | | ||| Sbjct 124099 GTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGGCAGTTCAGGCCA 124040 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || ||| ||||| | ||||| || || ||||||||||| ||||| Sbjct 124039 ATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTCA 123980 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| | | ||||| || | || | | || ||| || Sbjct 123979 ATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGCGTACCA 123920 Query 1630306 GCGTTGAAGAGCGTGGGCG 1630324 ||| |||| || || |||| Sbjct 123919 GCGCTGAACAGTGTAGGCG 123901 Score = 89.7 bits (98), Expect = 6e-12 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 ||||||| || || || || | ||||| || || | |||||||||| | ||| ||| Sbjct 125214 GGTTGACGACTTGGAATTCTCCGGCAAGCACACGACGAGAGTAGATGTTGCTAGTGTATG 125155 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| || ||||| ||||||||| || | ||| || ||||| | || Sbjct 125154 GC-TCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGAGGCAGTAGGCATTGGTGCA 125096 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCTGT-CGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511 || || || |||||||| | |||||||| ||| || | | | |||||||||||||| Sbjct 125095 ACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGCCTTG-AGCGCGTCCCAGTC 125037 Query 1627512 CCAGCGG 1627518 |||| || Sbjct 125036 CCAGAGG 125030 >seq444 Length=771681 Score = 87.8 bits (96), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | ||| || ||||||| |||||||| ||||| | || Sbjct 140487 GCTTGGCCAGCTCACCAGGGAGGATGAGTCGCACGGAAGTCTGGATTTCGCGTGATGAGA 140546 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||| || || || | |||||| || ||| ||| |||| | Sbjct 140547 TCGTTGACTTCTTGTTGTAGGCAGCGAGCTTGGAGGCCTCAGTTGCGACGCGCTCGAAGA 140606 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || ||||| | || |||||| | ||||||||| || ||| |||| Sbjct 140607 TGTCGTTCACGAAGGAGTTGAGGATCGACATGGCACGGTTGGAGATACCAGTGTCTGGGT 140666 Query 1254523 GCACCTGCTTGAGCAC 1254538 | ||||||||||| || Sbjct 140667 GGACCTGCTTGAGGAC 140682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106979584191565