Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq680 159 4e-33
seq674 138 1e-26
seq411 89.7 6e-12
seq444 87.8 2e-11
>seq680
Length=821847
Score = 159 bits (176), Expect = 4e-33
Identities = 229/318 (72%), Gaps = 10/318 (3%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| || ||| |||||| |||||||||||||| |||| |||||
Sbjct 341156 GCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATG 341097
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | |||||| ||||| | || |||||| |
Sbjct 341096 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAAGAGCGA-G 341038
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| ||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 341037 C-AGCAGTCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGA 340979
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
||||| ||||| | ||| ||| || |||| ||| || | |||||||| ||||
Sbjct 340978 GCAGCGCGCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTCCACGA 340919
Query 868929 TGATCTGCCTGGGCACGTCGGCC---GAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985
|||| || ||||| | | | | ||||||||| ||| | | | |||||||
Sbjct 340918 TGAT---GCTTTGCACGACCGACTTGGCGGGCTTGTTCTTGAGGTGAGAGAACAGCAGGC 340862
Query 868986 AGGCAAAGTCGCAGTGCA 869003
| || ||||| |||||
Sbjct 340861 AAGCGAAGTCAGTGTGCA 340844
Score = 122 bits (134), Expect = 1e-21
Identities = 179/253 (71%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| | |||| | | |||
Sbjct 340559 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGTATTTGC 340500
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || ||||||||||| || ||||||||| ||||||||
Sbjct 340499 ACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGATGCGGCGAAG 340440
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
|| || |||||||| ||| ||| |||||||||||| ||| || ||||| |
Sbjct 340439 AATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGCTTGTTCCAGTCG 340380
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | || || | ||| ||||| ||||||| || ||||||||||| |||
Sbjct 340379 TGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAGAATGATGCCTCGGCCTTCTTG 340320
Query 869870 TACATCTCCCATA 869882
||||| | |||||
Sbjct 340319 TACATGTTCCATA 340307
Score = 98.7 bits (108), Expect = 1e-14
Identities = 201/291 (69%), Gaps = 17/291 (6%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||| | |||||| |||| |||||| | |||||| || ||||||
Sbjct 340841 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTC 340782
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|| | ||| ||||||| ||| ||| ||| ||||| ||||| |||||||| || |||||
Sbjct 340781 TTCAACCAGAAGATGGACGC-GAATGAGCCGGAGAAGAAGATACCCTCGACAGCAGCAAA 340723
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGC 869355
| |||| | ||| || || || ||| ||||||| |||||| || ||
Sbjct 340722 GGCGATCAATCGCATAGCGAAAGTA--GAG----TCCTTGTCCGAGATCCATCGCAGTGC 340669
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG--TGGTC- 869412
|||||| |||||| | | | | || | ||||||||||| |||||| || ||
Sbjct 340668 CCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTGAAGAGGTATGTTCG 340609
Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
|| | | || || ||| || |||||||| ||||| || || |||||
Sbjct 340608 CTGCTTG---GGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTC 340561
>seq674
Length=224942
Score = 138 bits (152), Expect = 1e-26
Identities = 99/114 (87%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239
|||||||| || |||||| | ||||| ||| | |||||||| | || |||||| |||||
Sbjct 46000 ATCCTCGCAGCGAACTACATGGACATTAAGGCACTGCTCGACGTCGGCTGCAAGACTGTG 45941
Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 45940 GCCAACATGATCAAGGGCAAGTCGCCAGAGGAGATCCGAAAGACCTTCAACATC 45887
>seq411
Length=240905
Score = 89.7 bits (98), Expect = 6e-12
Identities = 175/259 (68%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|||||||| ||||| || |||| || ||||||| | ||| || | ||| || |||||
Sbjct 124159 TGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGAT 124100
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|||||| ||||| || | ||| | || | || || | |||||| | | |||
Sbjct 124099 GTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGGCAGTTCAGGCCA 124040
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || || || ||| ||||| | ||||| || || ||||||||||| |||||
Sbjct 124039 ATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTCA 123980
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||| |||||||||| | | ||||| || | || | | || ||| ||
Sbjct 123979 ATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGCGTACCA 123920
Query 1630306 GCGTTGAAGAGCGTGGGCG 1630324
||| |||| || || ||||
Sbjct 123919 GCGCTGAACAGTGTAGGCG 123901
Score = 89.7 bits (98), Expect = 6e-12
Identities = 135/187 (72%), Gaps = 4/187 (2%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
||||||| || || || || | ||||| || || | |||||||||| | ||| |||
Sbjct 125214 GGTTGACGACTTGGAATTCTCCGGCAAGCACACGACGAGAGTAGATGTTGCTAGTGTATG 125155
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| || ||||| ||||||||| || | ||| || ||||| | ||
Sbjct 125154 GC-TCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGAGGCAGTAGGCATTGGTGCA 125096
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCTGT-CGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511
|| || || |||||||| | |||||||| ||| || | | | ||||||||||||||
Sbjct 125095 ACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGCCTTG-AGCGCGTCCCAGTC 125037
Query 1627512 CCAGCGG 1627518
|||| ||
Sbjct 125036 CCAGAGG 125030
>seq444
Length=771681
Score = 87.8 bits (96), Expect = 2e-11
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | ||| || ||||||| |||||||| ||||| | ||
Sbjct 140487 GCTTGGCCAGCTCACCAGGGAGGATGAGTCGCACGGAAGTCTGGATTTCGCGTGATGAGA 140546
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| |||||| || || || | |||||| || ||| ||| |||| |
Sbjct 140547 TCGTTGACTTCTTGTTGTAGGCAGCGAGCTTGGAGGCCTCAGTTGCGACGCGCTCGAAGA 140606
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || || ||||| | || |||||| | ||||||||| || ||| ||||
Sbjct 140607 TGTCGTTCACGAAGGAGTTGAGGATCGACATGGCACGGTTGGAGATACCAGTGTCTGGGT 140666
Query 1254523 GCACCTGCTTGAGCAC 1254538
| ||||||||||| ||
Sbjct 140667 GGACCTGCTTGAGGAC 140682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106979584191565
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |