Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq444 147 3e-29
seq680 138 2e-26
seq674 127 3e-23
seq411 95.1 2e-13
>seq444
Length=771681
Score = 147 bits (162), Expect = 3e-29
Identities = 175/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| || ||||||||| ||||||| || || | |
Sbjct 140449 GTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCACCAGGGAG 140508
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
||| || ||||||| |||||||| ||||| | |||||| |||||| || |
Sbjct 140509 GATGAGTCGCACGGAAGTCTGGATTTCGCGTGATGAGATCGTTGACTTCTTGTT-GTAGG 140567
Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || | |||||| || ||| ||| |||| |||||||| || || ||||| |
Sbjct 140568 CAGCGAGCTTGGAGGCCTCAGTTGCGACGCGCTCGAAGATGTCGTTCACGAAGGAGTTGA 140627
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||||||| | ||||||||| || ||| ||||| ||||||||||| ||
Sbjct 140628 GGATCGACATGGCACGGTTGGAGATACCAGTGTCTGGGTGGACCTGCTTGAGGAC 140682
>seq680
Length=821847
Score = 138 bits (152), Expect = 2e-26
Identities = 231/329 (70%), Gaps = 9/329 (3%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| || ||| | |||||| ||| |||||| | |||||| || ||||||
Sbjct 340841 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTC 340782
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| | ||| ||||||| ||| ||| ||||| ||||| |||||||| || ||||||
Sbjct 340781 TTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAGATACCCTCGACAGCAGCAAAG 340722
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
||| | ||| || ||||| || || | | | |||||| || |||||
Sbjct 340721 GCGATCAATCGCATAGCGAAAGTAG--AGTCCTTGTCCGA-GATCCATCGCAGTGCCCAG 340665
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT--GGTC-CTTC 794577
|| |||||| | | | | || | ||||||||||| ||||||| | || || |
Sbjct 340664 TCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTGAAGAGGTATGTTCGCTGC 340605
Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637
| | || || ||| ||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct 340604 TTG---GGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGAGTGGATGTTC 340548
Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|| || |||||||||||| || |||||
Sbjct 340547 TCCATCATGATCTGGAAGCCGTAGAAGCA 340519
Score = 129 bits (142), Expect = 9e-24
Identities = 182/252 (72%), Gaps = 4/252 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| || ||| |||||| |||||||||||||| |||
Sbjct 341164 TGACACCGGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGA 341105
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008
| ||||| |||||| | ||| ||||||| | |||| ||| | | ||
Sbjct 341104 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAA 341045
Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
|||||| ||| |||| ||||| ||||| || |||||||||||||||||||| |||||
Sbjct 341044 GAGCGA-GCA-GCAGTCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTT 340987
Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||||||| ||||| ||||| | ||| | | || |||| ||| || | |||||
Sbjct 340986 CATGCCGAGCAGCGCGCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGC 340927
Query 794129 CTCGATGATGAT 794140
||| | ||||||
Sbjct 340926 CTCCACGATGAT 340915
>seq674
Length=224942
Score = 127 bits (140), Expect = 3e-23
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
||||||||||| | || || || | |||||||| || |||||| | ||||| |||
Sbjct 46029 AGGTCGACCAAGAGATGCTGTTCGAAATCATCCTCGCAGCGAACTACATGGACATTAAGG 45970
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
| || ||||| | || |||||||| ||||||||| | ||||||||||||||||| ||||
Sbjct 45969 CACTGCTCGACGTCGGCTGCAAGACTGTGGCCAACATGATCAAGGGCAAGTCGCCAGAGG 45910
Query 2035732 ACATCCGCAAGACCTTTAACATC 2035754
| ||||| |||||||| ||||||
Sbjct 45909 AGATCCGAAAGACCTTCAACATC 45887
>seq411
Length=240905
Score = 95.1 bits (104), Expect = 2e-13
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
|||||||||||||| || |||| || ||||||| | ||| || | || || |||||
Sbjct 124159 TGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGAT 124100
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
|||||| ||||| || | ||| | || | || || | |||||| | | |||
Sbjct 124099 GTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGGCAGTTCAGGCCA 124040
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
|| || || || ||| ||||| | ||||| | ||||| || |||||||| |||||
Sbjct 124039 ATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTCA 123980
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755
|| ||| |||||||||| | || ||||| ||
Sbjct 123979 ATGCTGTCATCCTTCATGTCGATCAAGAAGCATGA 123945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916039501478855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |