Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq444 147 3e-29 seq680 138 2e-26 seq674 127 3e-23 seq411 95.1 2e-13 >seq444 Length=771681 Score = 147 bits (162), Expect = 3e-29 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| ||||||| || || | | Sbjct 140449 GTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCACCAGGGAG 140508 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || ||||||| |||||||| ||||| | |||||| |||||| || | Sbjct 140509 GATGAGTCGCACGGAAGTCTGGATTTCGCGTGATGAGATCGTTGACTTCTTGTT-GTAGG 140567 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | |||||| || ||| ||| |||| |||||||| || || ||||| | Sbjct 140568 CAGCGAGCTTGGAGGCCTCAGTTGCGACGCGCTCGAAGATGTCGTTCACGAAGGAGTTGA 140627 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| | ||||||||| || ||| ||||| ||||||||||| || Sbjct 140628 GGATCGACATGGCACGGTTGGAGATACCAGTGTCTGGGTGGACCTGCTTGAGGAC 140682 >seq680 Length=821847 Score = 138 bits (152), Expect = 2e-26 Identities = 231/329 (70%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | |||||| ||| |||||| | |||||| || |||||| Sbjct 340841 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTC 340782 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||||| ||| ||| ||||| ||||| |||||||| || |||||| Sbjct 340781 TTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAGATACCCTCGACAGCAGCAAAG 340722 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| | ||| || ||||| || || | | | |||||| || ||||| Sbjct 340721 GCGATCAATCGCATAGCGAAAGTAG--AGTCCTTGTCCGA-GATCCATCGCAGTGCCCAG 340665 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT--GGTC-CTTC 794577 || |||||| | | | | || | ||||||||||| ||||||| | || || | Sbjct 340664 TCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTGAAGAGGTATGTTCGCTGC 340605 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 | | || || ||| ||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct 340604 TTG---GGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGAGTGGATGTTC 340548 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||||||||||| || ||||| Sbjct 340547 TCCATCATGATCTGGAAGCCGTAGAAGCA 340519 Score = 129 bits (142), Expect = 9e-24 Identities = 182/252 (72%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| || ||| |||||| |||||||||||||| ||| Sbjct 341164 TGACACCGGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGA 341105 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | ||| ||||||| | |||| ||| | | || Sbjct 341104 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGCCAA 341045 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||| ||| |||| ||||| ||||| || |||||||||||||||||||| ||||| Sbjct 341044 GAGCGA-GCA-GCAGTCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTT 340987 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| ||||| ||||| | ||| | | || |||| ||| || | ||||| Sbjct 340986 CATGCCGAGCAGCGCGCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGC 340927 Query 794129 CTCGATGATGAT 794140 ||| | |||||| Sbjct 340926 CTCCACGATGAT 340915 >seq674 Length=224942 Score = 127 bits (140), Expect = 3e-23 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 ||||||||||| | || || || | |||||||| || |||||| | ||||| ||| Sbjct 46029 AGGTCGACCAAGAGATGCTGTTCGAAATCATCCTCGCAGCGAACTACATGGACATTAAGG 45970 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | || ||||| | || |||||||| ||||||||| | ||||||||||||||||| |||| Sbjct 45969 CACTGCTCGACGTCGGCTGCAAGACTGTGGCCAACATGATCAAGGGCAAGTCGCCAGAGG 45910 Query 2035732 ACATCCGCAAGACCTTTAACATC 2035754 | ||||| |||||||| |||||| Sbjct 45909 AGATCCGAAAGACCTTCAACATC 45887 >seq411 Length=240905 Score = 95.1 bits (104), Expect = 2e-13 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||||||||| || |||| || ||||||| | ||| || | || || ||||| Sbjct 124159 TGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGAT 124100 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||| ||||| || | ||| | || | || || | |||||| | | ||| Sbjct 124099 GTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGGCAGTTCAGGCCA 124040 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || ||| ||||| | ||||| | ||||| || |||||||| ||||| Sbjct 124039 ATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTCA 123980 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 || ||| |||||||||| | || ||||| || Sbjct 123979 ATGCTGTCATCCTTCATGTCGATCAAGAAGCATGA 123945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916039501478855