Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq530 141 6e-29
seq455 120 2e-22
seq671 102 5e-17
seq653 89.7 3e-13
>seq530
Length=291
Score = 141 bits (156), Expect = 6e-29
Identities = 163/217 (75%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | |||||||||||||| ||||| ||||| ||||| |||| ||||
Sbjct 53 CAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATC 112
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| ||||| || ||||||||||| || |||||||| | || | |||||||||||
Sbjct 113 CTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 172
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | | |||||| |||| || |
Sbjct 173 TTGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGA 228
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| || ||||||||||| || |||||||||||
Sbjct 229 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
>seq455
Length=1194790
Score = 120 bits (132), Expect = 2e-22
Identities = 145/195 (74%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
||||| || ||||| |||||||| || |||| | || || |||||||| |||||||||
Sbjct 1130797 TCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAG 1130856
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
|||| || |||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 1130857 ATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGAC--AT 1130914
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
| ||||| || | | |||||| |||| || |||||||| || |||||||||||
Sbjct 1130915 --TGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTT 1130972
Query 34963 TACAAAGATCTGCAT 34977
|| |||||||||||
Sbjct 1130973 GACGAAGATCTGCAT 1130987
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | |||||||||||||| ||||| ||||| ||||| |||| ||||
Sbjct 1130547 CAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATC 1130606
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| ||||| || ||||||||||| || |||||||| | || | |||||||||||
Sbjct 1130607 CTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTC 1130666
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | || | || | || || || | || || ||
Sbjct 1130667 TTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGT 1130726
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || ||||| ||||| || ||||| |||||
Sbjct 1130727 CTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
>seq671
Length=186828
Score = 102 bits (112), Expect = 5e-17
Identities = 139/192 (72%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 34782 TGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGG 34841
||| | ||||||| ||||| ||||| || || |||| |||| |||| ||||||||| |
Sbjct 53993 TGCGCACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAG 53934
Query 34842 CGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGA 34901
||||||||| || |||||||| | || | ||||||||||| | || || ||||
Sbjct 53933 CGAAGATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA 53874
Query 34902 CGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
| || | ||||| || | ||| || |||| ||| || ||||| || ||||||
Sbjct 53873 C--AT--TGTCGATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGG 53818
Query 34958 GTCTTTACAAAG 34969
||||| || |||
Sbjct 53817 GTCTTGACGAAG 53806
>seq653
Length=579839
Score = 89.7 bits (98), Expect = 3e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | |||| ||||||||| ||||| ||||| || |||| ||||
Sbjct 344597 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCC 344656
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||||| || |||||||| | || | |||||||||||
Sbjct 344657 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 344715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325685079553955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |