Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq411 226 3e-54 seq680 163 3e-35 seq455 132 5e-26 seq530 116 4e-21 seq653 86.0 6e-12 >seq411 Length=240905 Score = 226 bits (250), Expect = 3e-54 Identities = 1112/1734 (64%), Gaps = 47/1734 (3%) Strand=Plus/Minus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA-GTCGCTTTATCTTCATCTC 148120 || || ||||| || || ||||| |||||||||| || | || || | || || || Sbjct 125410 TGATCGATGAAGGCACCGCGGTCCGCGGCCATTTGAACAATGTTGCGCTGACTG-ATTTC 125352 Query 148121 CCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCG--ATGCGCTGCACC 148178 |||| | |||||||||| | ||||| | || |||||| ||| ||||| ||||| Sbjct 125351 CCAGACAGTCTTGTACAACGCCTTGAGGTCGTCCGGAATGT--TCGGAATGCGTTGCACG 125294 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 || |||| || || | || | || ||| | || | | | | |||| Sbjct 125293 GAACCGCCGTCGGCGATGATGCGGTTCTTCATGTTCTCAGACCACAATCCACGGTCGACG 125234 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 || || | | || | | || || || || || || ||||| ||||| || || ||| Sbjct 125233 AGATCCTTCAGCAACCATGGGTTGACGACTTGGAATTCTCCGGCAAGCACACGACG-AGA 125175 Query 148299 -TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || | |||||| || | || || || |||||||| ||||| ||||||| || | Sbjct 125174 GTAGATGTTGCTAGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGA 125115 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 || || ||||| || ||||| || |||||||| | |||| | | || ||| Sbjct 125114 GGCAGTAGGCATTGGTGCAACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGC 125055 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 ||| || || ||||||||||||| || ||||| ||| |||||| |||||||| || Sbjct 125054 CTTGAGCGCGTCCCAGTCCCAGAGGTCTGAAGGTGTGACGCCCCACATCTCGTACTGAAG 124995 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG 148537 ||| | | ||| ||||||||||| ||| || || || || || Sbjct 124994 TTCGCCCTTTGAAACCGGGGAGCCCTCGTACGTCTCGTATGGACCAAGCTTGCTAGCAAG 124935 Query 148538 TTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAG 148597 ||||| || |||||| ||| ||| || |||||| || || ||| || | Sbjct 124934 GTCGCACGATGCGGTGAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAGGTG 124875 Query 148598 CGCCGCCGACTCGCTT-TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC-C 148655 ||| || | || | ||||| || || || || || || ||||| || | Sbjct 124874 ACGGGCCT-CTGGAGACTCAAAAGGCATGCGTAGAGCCAGGAAAGCATCAGCAAGACCGC 124816 Query 148656 TGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GG 148714 || || || | || || || | ||| |||||| ||| ||| | | || Sbjct 124815 TG-ACACCGAGACCGATTGGTCTGTGGCGCATGTTGCTCTTCTTCGC-CTCAGGCACTGG 124758 Query 148715 ATAGTGGTTGCGGTCGATGATCTTGT-CAAGAT--TGCGCACCACCACCTTTGTA-ATTC 148770 ||||||||| ||||||||||||| |||| | || || || ||| | | | Sbjct 124757 GTAGTGGTTGACTTCGATGATCTTGTTCAAGTTCTTGGTGACGAC-----TTGCACAACC 124703 Query 148771 T-GCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCA--TCGGTT--CACGGC 148822 | | | ||| ||||| ||| | || || || | ||| | | |||| || || Sbjct 124702 TCGTGGAGCTTCTCAAAGTCGAAACGCTCGTTCTCAA-GATCGACGTAGGTTGGCAGAGC 124644 Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882 | ||| || || ||||||||||| ||| || || ||| ||||||| | |||||| | Sbjct 124643 AAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCAGT 124584 Query 148883 GCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942 ||||| ||| | |||||| || | |||||| || |||||||||| |||| || Sbjct 124583 GCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 124524 Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATG 149002 |||||||| |||||| | ||||| ||||| || ||| | ||||| || | | || Sbjct 124523 ATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGAT-AGC--ATA 124467 Query 149003 CAGGTCC---TGCGCGCGCACTTGCTGCTCGT-AGCGACCCTCCTGCTCGTATAAAGTAT 149058 | | || || ||||| || || | ||| ||||| || |||||| || | Sbjct 124466 CCAGACCTTTTGAGCGCGGACAGTCT-CACGTCCACGACCTTCTCTCTCGTAGCGGGTGT 124408 Query 149059 ACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACA 149118 ||||| ||||||| | || ||||| ||| ||||||| ||||||| | ||||||| Sbjct 124407 ACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACA 124348 Query 149119 TGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCG 149178 |||| | ||| | ||| || | || |||||||| |||||||| || | ||| || | Sbjct 124347 TGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAG 124288 Query 149179 CGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGC 149237 || | | || || || | | ||| || || || ||| ||| |||| | Sbjct 124287 CGAAGAACAGATCACGTG-CACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATG 124229 Query 149238 ACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC--- 149294 | | || | || |||||||| ||||| | ||| | |||| |||||| ||| Sbjct 124228 AAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTG 124169 Query 149295 TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATG 149354 ||||| || |||||||| | ||| | |||| || | || || | ||| || | Sbjct 124168 TTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGA 124109 Query 149355 CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACG 149414 ||| ||| |||||||| || |||| || || || | ||||| | Sbjct 124108 CCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGGCAG 124049 Query 149415 TTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTA 149473 || | ||| || || || | | ||| ||||| |||| |||| | || || ||| Sbjct 124048 TTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTC-AGTGTGTCGTA 123990 Query 149474 GATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA 149533 ||| ||||| |||||||| ||||||| | || ||||| || || || | | Sbjct 123989 GATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATT 123930 Query 149534 ACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCAT 149593 |||| || || ||||| || || |||||||| || ||||| | ||| Sbjct 123929 CGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTA 123870 Query 149594 CTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCAT 149653 | ||| | ||| | || || || || ||||| ||||| || | || || ||||| Sbjct 123869 GTTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACGCAT 123810 Query 149654 CAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTC 149713 | ||| ||||| |||| ||| || |||||| |||| ||||||||| | ||| Sbjct 123809 GATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCGTTC 123750 Query 149714 TAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 || |||||| | |||||||| | ||||| || || | | | | | ||||||| Sbjct 123749 CAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAATCTCTGTCATAGACAATGGC 123696 >seq680 Length=821847 Score = 163 bits (180), Expect = 3e-35 Identities = 539/819 (66%), Gaps = 33/819 (4%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||| || || ||||| || ||||| || ||||| | | || ||||| | Sbjct 341151 CTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTC 341092 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTA-TTTCGGCTGGCCCAACTGTACG-AGC 120468 ||| || ||||| |||||| | ||||| || | ||| || || |||| | | ||| Sbjct 341091 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTG--CCAAGAGCGAGCAGC 341034 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 |||||||| || |||||||||||||||| ||||||| || ||||||||||| |||| | Sbjct 341033 AGTCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGCAGC 340974 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 || |||| || || || || || | ||||||| | || |||||| || ||| Sbjct 340973 GCGCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTCCACGATGATG 340914 Query 120589 GCGAGC---ATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 || | | | | |||| ||||| | || | | | | | |||||| Sbjct 340913 CTTTGCACGACCGACTTGGCGGG---CTTGTTCTTGAGGTGAG---AGAACAGCAGGCAA 340860 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| ||||||| ||||||||| || || || ||||||||| || || ||||| Sbjct 340859 GCGAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCA 340800 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 | ||||| || | |||| | |||| |||| || || ||| || ||||| | Sbjct 340799 GCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAGATA 340740 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC---G 120822 ||||| || |||||||||| || ||| || || || | ||| | |||| | Sbjct 340739 CCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAAGTAG-AGTCCT--TGTCCGAG 340683 Query 120823 ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTT- 120881 ||||| || ||||| || |||||| |||| | || || || |||| ||||| Sbjct 340682 ATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGGATGTTGTCGATGGCGTTG 340623 Query 120882 CAGCAGCATG-TCGC-GCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTAC 120939 || | ||| |||| ||| | ||| | | | || | |||||| || ||| Sbjct 340622 AAGAGGTATGTTCGCTGCTTGGGCTC--GCTGATGTATGTG-TCGATGAGGAGGGAGTAT 340566 Query 120940 ATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTCCAGC 120999 | || | ||| | | ||| |||| | || | ||| ||| | | |||||| | Sbjct 340565 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGT 340506 Query 121000 TCGGGCACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGC 121058 ||||| | ||||| || ||||| ||||| || || || | ||||| || Sbjct 340505 ATTTGCACCTCGGCGCTGAAT-CGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGATGC 340447 Query 121059 GGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGA---GCTTGTG 121115 ||||||||| || || ||||| ||| ||| ||||||||||| ||| |||||| Sbjct 340446 GGCGAAGAATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGTCGCTTGTT 340387 Query 121116 CGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTC 121154 | | |||| ||||||||||| || | ||| || Sbjct 340386 C---CAGTCGTGGAGATCCTTGGACAGATCAATCTCTTC 340351 >seq455 Length=1194790 Score = 132 bits (146), Expect = 5e-26 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||||||||| ||||| || ||||||||| || || ||| ||||||||| Sbjct 1131012 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGT--ACGGCCGTCCTCGAGT 1131069 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| ||||||| ||||||||||| ||||| ||||| |||||||| ||| Sbjct 1131070 TGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATC 1131129 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | |||||| | | |||||| |||| ||||| || |||||| Sbjct 1131130 TTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCG 1131189 Query 133635 GTCA 133638 |||| Sbjct 1131190 GTCA 1131193 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||| |||||||| ||| | || | ||||||||||| || |||||||| ||||| Sbjct 1130832 GTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTT 1130891 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | | ||| || || | |||| Sbjct 1130892 GTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGAT 1130951 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||| || || || ||||| |||||||| Sbjct 1130952 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 >seq530 Length=291 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| || | ||| ||| | ||||| | ||||||||||||| Sbjct 74 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCA-TCCTCCAACTGCTTGCCCGCGA 132 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||||||||| || |||||||| |||||||| |||||| ||||| | Sbjct 133 AGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACAT 192 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | |||||| | | ||| || || | |||| ||| |||||||| || || || | Sbjct 193 TGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 252 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 253 CGAAGATCTGCAT 265 >seq653 Length=579839 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| |||| | ||| | | | |||||||| Sbjct 344603 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCA-TCCTCGAG 344661 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||||||||| ||| | || | ||||||||||| || ||||| || |||||||| Sbjct 344662 CTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 344715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409046831800