Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq455 111 1e-19
seq530 102 5e-17
>seq455
Length=1194790
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| | |||||| || ||||| || ||||| |||||||| || ||
Sbjct 1130760 ACCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGA 1130819
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| |||| || | ||| || ||||| || ||||| |||||||| || | ||
Sbjct 1130820 GAGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 1130879
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| || || || | ||| ||| | |||||||| || || |
Sbjct 1130880 GATGCCCTCCTTGTCTTGGATCTTGGACTTGA-CATTGTCGATAGTGTCGCTCGACTCGA 1130938
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| ||||| || || || || | || || || ||||||||||||
Sbjct 1130939 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 1130988
Score = 84.2 bits (92), Expect = 1e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | || | ||| || ||| ||| || || ||||||||||||||
Sbjct 1130988 ACCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 1131047
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || |||| || | ||| || || || ||||| | ||||||||| || | ||
Sbjct 1131048 CAGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGG 1131107
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| ||| ||| | | || | ||| | ||||||||| || ||||
Sbjct 1131108 AATGCCCTCCTTGTCCTGAATCTTC-GACTTGACGTTGTCGATGGTGTCGCTAGACTCCA 1131166
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| || | ||||| || || || ||
Sbjct 1131167 CCTCGAGGGTGATAGTCTTGCCGGT 1131191
>seq530
Length=291
Score = 102 bits (112), Expect = 5e-17
Identities = 155/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || || |||||||| || || |||||||| || || |||||||| |
Sbjct 50 ACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACC 109
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| ||||| || || || || || |||| |||||||| || | || | || || ||
Sbjct 110 ATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTT 169
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| || || || | ||| ||| | |||||||| || || || |||| ||||
Sbjct 170 GTCTTGGATCTTGGACTTGA-CATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGA 228
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || || || | || || || ||||||||||||
Sbjct 229 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328696208174400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |