Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq411 143 3e-29 >seq411 Length=240905 Score = 143 bits (158), Expect = 3e-29 Identities = 960/1519 (63%), Gaps = 41/1519 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| ||||| || || || || |||||||| | |||| || | ||||||||| | || Sbjct 125212 TTGACGACTTGGAATTCTCCGGCAAGCACACGAC-GAGAGTAGATGTTGCTAGTGTATGG 125154 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| || ||| | || || | |||| || |||||||| || || Sbjct 125153 CTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGAGGCAGTAGGCATTGGTGCAAC 125094 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 || | || || || | ||||| | | ||| ||| |||| | | | ||||||||| Sbjct 125093 CAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGCCTTGAGCGCGTCCCAGTCCCA 125034 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC--TCGACTGGCGGGA 147129 | || || || ||| |||||| |||||||| || | || | || |||| Sbjct 125033 GAGGTCTGAAGGTGTGACGCCCCACATCTCGTACTGAAGTTCGCCCTTTGAAACCGGGGA 124974 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGT-CGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 ||| || |||| ||| || | ||| || | || || ||| ||| Sbjct 124973 --GCCCTCGTACGTCTCGTATGGACCAAGCTTGCTA-GCAAGGTCGCACGATGCGGTGAG 124917 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCTC 147246 ||| | | ||| ||||| ||| ||| || ||| ||| |||| || ||| | Sbjct 124916 CGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAGGTGACGG--GCCTCTGGAGAC 124859 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 || ||||||| || ||| || || ||||| || | ||| || ||||| ||||| Sbjct 124858 TCAAAAGGCATGCGTAGAGCCAGGAAAGCATCAGCAAGACCGCTGACACCGAGACCGATT 124799 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTC--GCTATGGGATAGTGGTTGCGATCAA 147364 |||| || |||||| |||||| ||| || |||| ||||||||| || | Sbjct 124798 GGTCTGTGGCGCATGTTGCTCTTCTTCGC-CTCAGGCACTGGG-TAGTGGTTGACTTCGA 124741 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | |||||||| | ||| || |||| | | ||| ||||| || || Sbjct 124740 TGATCTTGTTCAAGTTCTTGGTGACGACTTGCACAACCTCGTGGAGCTTCTCAAAGTCGA 124681 Query 147425 AAGTCCCGTCTTCGACACGTACGCATTGGTT--CACGGCGATAGACGCCAGATTGCAGAC 147482 || | ||| || | | ||| | |||| || || | ||| || || ||||| || Sbjct 124680 AACGCTCGTTCTCAAGATCGACGTA--GGTTGGCAGAGCAAGAGATGCAAGGTTGCACAC 124623 Query 147483 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542 ||| ||| || | || |||||| | ||| || | ||||| |||| | || || Sbjct 124622 GGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCAGTGCACAAGTTGGAACTCTTGAT 124563 Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||| | || | ||| ||||| || || ||| || || ||| |||||||| | || Sbjct 124562 CGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAAGG 124503 Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCT--GCGCTCGCACC 147660 ||| || ||||| || | ||| | |||| | || ||| | | | || || || Sbjct 124502 TCCACCAGTCTCAGTCTGGGCTTCCAAGATAG-CATAC-CAGACCTTTTGAGCGCGGACA 124445 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || || || || || | ||||| || ||||| | ||| |||||||| ||| Sbjct 124444 GTCTCACGTCCACGACCTTCTCTCTCGTAGCGGGTGTACAGCTCCTCGAACTCGTCACCG 124385 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780 || ||| || || || || |||| || || ||||| || | ||| ||| || Sbjct 124384 TACACATCAGCGAGACCAGGGCACTCATTGGGGCACATGAGTGTCCATTCTGCGTTGGCT 124325 Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840 | || || ||| |||||||| || | ||| || ||| | | ||||| || || | Sbjct 124324 TCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGCGAAGAACAGATCACGTGCAC-G 124266 Query 147841 CAAT----CCTCGGCGCCCATGTTGCGTT--TCAAATTAAGCACGCTATAGATGTCGGCG 147894 || | ||| || | ||||| || | | ||| | || || || ||| Sbjct 124265 CACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCA-TGAAGGAG---AT-GACATCTGCG 124211 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACA 147951 ||||| || || | ||||| ||| | ||| || |||||| || || ||||||||| Sbjct 124210 TGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTTGCCACCTTGGTCGACA 124151 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | ||| | |||| || | ||||||| ||| || || || | | |||||||| Sbjct 124150 TAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGATGTGCCGTTT 124091 Query 148012 GTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070 ||| || | || | | | | | || | | ||| ||| | |||||| || || Sbjct 124090 GTGCCTGCAATGTATGATCCAGTAG-CACGGATCTTGTGGCAGTTCAGGCCAATACCACC 124032 Query 148071 GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTC 148130 | | ||| || || |||||| || ||| |||||| || || |||||||| Sbjct 124031 AGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTCAATGCTGTC 123972 Query 148131 GTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAA 148190 | || | | | | ||| || || ||| || || | | || |||| || || ||| Sbjct 123971 ATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGCGTACCAGCGCTGAA 123912 Query 148191 AAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGC 148250 || || || ||||| || || |||| | ||| | || |||||||| || Sbjct 123911 CAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAGTTGTAGGTCTCAATGGC 123852 Query 148251 GTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCG 148310 | | ||||| ||||||||||| || || | || || ||||||| |||||||||||||| Sbjct 123851 GGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACGCATGATCATGTGCTGTGGTCT 123792 Query 148311 TTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAA 148370 |||||||||| | || ||| | ||| ||| || || ||| ||||||| Sbjct 123791 CTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGCGTTCCAGCGTCTTGAAACCAAA 123732 Query 148371 GTACTTGTAATCAAAATCT 148389 ||| | ||| | |||||| Sbjct 123731 GTATTGGTAGTTGAAATCT 123713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599612390200