Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq680 187 4e-41 seq444 102 1e-15 >seq680 Length=821847 Score = 187 bits (206), Expect = 4e-41 Identities = 359/516 (70%), Gaps = 30/516 (6%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || ||||||||||| || || ||||| ||||| ||| | || | Sbjct 340305 GATATGGAACATGTAC-AAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATC 340363 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| || | | |||||||||||| ||| Sbjct 340364 TGTCCAAGGATCTCCACG----ACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTC 340419 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||| || || || |||||| ||| ||||| || ||||||||||| Sbjct 340420 ATCTCACACGTCCTTGCATTCTT-CGCCGCATCCGACGGCATTGTCAACGAGAACCTGGT 340478 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | ||||| ||| | || |||||||| | || ||||| |||||||| Sbjct 340479 CGAGCGATTCAGCGCCGAGGTGCAAATACCGGAGGCACGATGCTTCTACGGCTTCCAGAT 340538 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || ||||| ||||| |||||||| ||| ||| || Sbjct 340539 CATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGA 340598 Query 1456068 CCCGGTCGAGAAG-GACC--ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 || | || || || | ||||||| ||||||||||| | || | | | | Sbjct 340599 GCC---CAAGCAGCGAACATACCTCTTCAACGCCATCGACAACATCCCTTGTATCCGCAG 340655 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 |||||| |||||||| || |||||| ||||||| ||| || || || | Sbjct 340656 AAAGGCTGACTGGGCACTGCGATGGATCTCGGACAAGGA----CTCTAC-TTTCGCTATG 340710 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || | ||| |||||| || |||||||| ||||| ||||| ||| ||| ||| |||| Sbjct 340711 CGATTGATCGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTC-GCGTCCAT 340769 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| ||| | |||||||| || |||||| | || || Sbjct 340770 CTTCTGGTTGAAGAAGCGTGGTCTCATGGCTGGCCT 340805 Score = 134 bits (148), Expect = 2e-25 Identities = 231/327 (71%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGA---CCG 1456508 ||||| |||||| || || ||||| | | | ||| |||||||| | | | | Sbjct 340844 TGCACACTGACTTCGCTTGCCTGCTGTTCTCTCACCTCAAGAACAAGCCCGCCAAGTCGG 340903 Query 1456509 ACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 ||||| ||||| ||||||| |||||||| | || ||| |||| || | | ||| Sbjct 340904 TCGTGCA-AAGCA--TCATCGTGGAGGCCGTTGCCATTGAGCAAGAATTCTTGACCGATG 340960 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 | ||||| ||||| ||||||||||||| | |||||||||||||||||||| | || Sbjct 340961 CTCTGCCTTGCGCGCTGCTCGGCATGAACGCTA-AGCTCATGTGCCAGTACATTG-AGTT 341018 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 |||||| ||||| ||||| || || ||| | | ||| |||| | |||||| Sbjct 341019 TGTCGCTGACCGACTGCTGCTCGCTCTTGGCAAC-CAAAAGTTCTACAACGCCACCAACC 341077 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | ||| | |||||| ||||| |||| |||||||||||||| |||||| || | Sbjct 341078 CCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTG 341137 Query 1456749 -TGGCGAGTACGCCAAGGCCGGCGTCA 1456774 |||||| ||| |||||||| |||| Sbjct 341138 TTGGCGACTACCAGAAGGCCGGTGTCA 341164 >seq444 Length=771681 Score = 102 bits (112), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| ||||| || | | ||| |||||| ||||||||||| Sbjct 140682 GTCCTCAAGCAGGTCCACCCAGACACTGGT-----ATC-TCCAACCGTGCCATGTCGATC 140629 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 | ||||| || || |||||||| |||| ||| ||| || |||||| || || Sbjct 140628 CTCAACTCCTTCGTGAACGACATCTTCGAGCGCGTCGCAACTGAGGCCTCCAAGCTCGCT 140569 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 || ||||||| |||||| | ||||| |||||||| ||||||| || ||| Sbjct 140568 GCCTACAACAAGAAGTCAACGATCTCATCACGCGAAATCCAGACTTCCGTGCGACTCATC 140509 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || || ||||||| ||||||||| || |||||||||| Sbjct 140508 CTCCCTGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 140466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177623601175090