Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq411 167 3e-36 seq680 100 4e-16 seq638 86.0 8e-12 >seq411 Length=240905 Score = 167 bits (184), Expect = 3e-36 Identities = 893/1403 (64%), Gaps = 49/1403 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||||| || ||||| || || |||| ||| || | ||||| Sbjct 125174 GTAGATGTTGCTAGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGA 125115 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||||||||| | || ||| ||| || | ||| | || ||| | Sbjct 125114 GGCAGTAGGCATTGGTGCAACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGC 125055 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| | |||||||| || | || ||| | || ||||||| || ||||| Sbjct 125054 CTTGAGCGCGTCCCAGTCCCAGAGGT-CTGAAGGTGTGACGC-CCCACATCTCGTACTGA 124997 Query 110885 AGCAC-CCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG--GCTTCA 110941 || | ||||| | | |||| || ||||| | || || || | ||| | ||| | Sbjct 124996 AGTTCGCCCTTTGAAACCGGG-GAGCCCTCGTACGTCTCGTATGGACCAAGCTTGCT--A 124940 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 || | || || || || | ||||| || ||||| || ||||| | | ||| Sbjct 124939 GCAAGGTCGCACGATGCGGTGAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTTC 124880 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCG 111056 | | ||| || || ||||| ||||||| | || ||| |||| | Sbjct 124879 AGGTGACGGGCCTCTGGAGACTCAAAAGGCATGCGTAGAGCCAGGAAAG-----CATCAG 124825 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | ||||| ||||| | ||| || |||||||| ||||| || ||| ||| || Sbjct 124824 CAAGACCGCTGACACCGAGACCGATTGGTCTGTGGCGCATGTTGCTCTTCTTCGC---CT 124768 Query 111117 CA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 111173 || || || || || || |||| ||| | || ||||| || | | Sbjct 124767 CAGGCACTGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTCTTGGTGACGACTTGCA 124708 Query 111174 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT-CTCTTCATTGACATACTTTGGA 111232 | || || || || ||| | || ||| || || ||| || ||| || |||| Sbjct 124707 CAACCTCGTGGAGCTTCTCAAAGTCGAAAC-GCTCGTTCTCAAGATCGACGTAGGTTGGC 124649 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 || || | ||||| | ||||| || || ||| || | |||||||| | || Sbjct 124648 AGAGCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATC 124589 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || |||||||||||||| ||||| || | ||||| ||||| ||||| |||| Sbjct 124588 TCAGTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTG 124529 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 |||||||||||||||||| | || || ||||| ||||| | || | ||||| Sbjct 124528 GCAGCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCA 124469 Query 111413 TTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 111472 | ||| || | || | ||| | | | || || || |||||| ||| Sbjct 124468 TACCAGACCTTTTGAGCGCGGACAGTCTCACGTCCACGACCTTCTCTCTCGTAGCGGGTG 124409 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 || || | || ||||| ||||| | | || | |||||| || || | || || Sbjct 124408 TACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCAC 124349 Query 111533 AAAAGAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | || | ||||| | | || | || || ||||||||||| || ||||| ||||| | Sbjct 124348 ATGAGTGTCCATT--CTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAA 124291 Query 111591 GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 | | | || ||||| | | ||| | | || || | || ||||| || | || Sbjct 124290 GAGCGAAGAACAGATCACGTGCACGCA-CTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCC 124232 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA 111709 | ||| |||| ||| |||||||||||||| || |||| |||| | || || Sbjct 124231 ATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCC---AGGA 124175 Query 111710 CGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 ||| ||| |||| | |||||||| || ||| || | ||||| | ||| || Sbjct 124174 CGCTTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGG 124115 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 || | ||||| ||| || ||||| || ||| ||| | | || | | | Sbjct 124114 ATGAGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTG 124055 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAG 111881 ||| || || |||||||| ||||| ||| ||||| | ||||| | | | | || | Sbjct 124054 TGGCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCA-AGT-CTTCAGTG 123997 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | | |||||||| | || ||| ||||| || |||| | |||||| | || || Sbjct 123996 TGTCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACT 123937 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 112000 | | | || |||||||| |||| || || || | ||||| |||| || | | Sbjct 123936 GTGCATTCGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAA-GTATTTGTTC 123878 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| | || ||| ||||| | | | | || || || || |||||||| || | || Sbjct 123877 GACATGTAGTTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCC 123818 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || ||||||| ||||| |||||| Sbjct 123817 ACACGCATGATCATGTGCTGTGG 123795 >seq680 Length=821847 Score = 100 bits (110), Expect = 4e-16 Identities = 290/439 (66%), Gaps = 22/439 (5%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 341147 TAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATG 341088 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA----TGGGTGGCACCCCAACTTGTTTGAGGAG 122486 ||||| || || || | ||||| | | | ||| || ||| || || Sbjct 341087 AAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTTTGGTTGC----CAAGAGCGAGCAGCAG 341032 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 || || | ||| |||||||||||| | |||| || || |||||| |||| || Sbjct 341031 TCGGTCAGCGACAAACTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGCAGCGC 340972 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-- 122604 || || || || || | ||| ||| |||||| |||| ||||| ||||||| Sbjct 340971 GCAAGGCAGAGCATCGGTCAAGAATTCTTGCTCAATGGCAACGGCCTC---CACGATGAT 340915 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA-AGAGCTCCACG---GC 122660 || | | | | | || || | | | || || ||| | || | || Sbjct 340914 GCTTTGCACGACCGACTTGGCGGGCTTGTTCTTGAGGT---GAGAGAACAGCAGGCAAGC 340858 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 || || ||| | ||||| || ||||| || || || || |||||| || || | Sbjct 340857 GAAGTCAGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGC 340798 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 122779 ||||||||| |||||||||||||| | || | ||| |||||| |||||||||||||||| Sbjct 340797 CATGAGACCACGCTTCTTCAACCAGAAGATGGACGC-GAATGAGCCGGAGAAGAAGATAC 340739 Query 122780 CCTCCACACACGCAAACGC 122798 |||| ||| ||||| || Sbjct 340738 CCTCGACAGCAGCAAAGGC 340720 >seq638 Length=503197 Score = 86.0 bits (94), Expect = 8e-12 Identities = 199/292 (68%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 182517 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 182576 || |||||||||||||||||||| | ||| ||||||||| ||||| | | ||||||| Sbjct 188132 AGTCCCTTGATGTGAGAACCATCGTGATCTTGATCTGTCATGATCATTATATGACCATAT 188073 Query 182577 CGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTTG 182633 || | | || ||| ||| || || ||||| || ||||| | || |||||| Sbjct 188072 CGCA-AACCGACGGTCGTTGTGTACTCCTT--CTTGTGCTGTAGACCGATGAATTTCTTG 188016 Query 182634 A-GATCATTGAA-CTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCT 182691 | | || |||| ||| ||| | || ||| | || || ||||| |||||||| Sbjct 188015 ATGTTC--TGAATTTCCGCGTTCTTCGAAATCTGGTCAACGGAGGCGTCGCGAACATTGA 187958 Query 182692 TACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCG 182751 |||||| ||||| || || |||||| ||| || || | || |||| |||| | Sbjct 187957 GCACTTTACCACGAAGGGGAAAAACACCGAAGTAGTCTGGATCGACCACAGCACGACCTG 187898 Query 182752 CAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTT 182803 | | ||| || || || |||||||| || | ||||||||||| || Sbjct 187897 CCAACGCCAGCAAGGCGGCTGAGTCACCCTCAGTCAAGATGAGAGTACATTT 187846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016730972000