Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq411 208 9e-49 seq680 111 2e-19 >seq411 Length=240905 Score = 208 bits (230), Expect = 9e-49 Identities = 1124/1779 (63%), Gaps = 47/1779 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || | | ||| | || |||||||||||||| || ||||| || | Sbjct 125550 TGAACTGAATCGGAGCAGACGCGGCTTGTGTACGGAGGTAGTACATGCCGGTCTTCAGGC 125491 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | |||| | ||| || | || | Sbjct 125490 CAAGCTTCCAGCCAGTAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGCTCCTTCAAGT 125431 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| ||||| ||||||||||||||| || || ||||| ||||| | || Sbjct 125430 GGATGTTCAAGCTTTGAGATTGATCGATGAAGGCACCGCGGTCCGCGGCCATTTGAA--- 125374 Query 117985 CATCCTTCATCT---TGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 || || || |||||||||| |||||| |||| | ||| | || || || | Sbjct 125373 CAATGTTGCGCTGACTGATTTCCCAGACAGTCTTGTACAACGCCTTGAGGTCGTCCGGAA 125314 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTG 118101 | | | || ||| | ||| || || | || ||| | | |||||| | || | Sbjct 125313 TGTTCGGAATGCGTTGCACGGAACCGCCGTCGGCGATGATGCGGTTCTTCATGTTCTCAG 125254 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTC 118159 |||| | ||| | |||||||| || | ||| | |||| || || || Sbjct 125253 ACCACAATCCACGGTCGACGAGATCCTTCAGCAACCATGGGT--TGACGACTTGGAATTC 125196 Query 118160 ACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 118218 || || || || | ||| ||||| ||| | ||||||||||| |||||||| ||| Sbjct 125195 TCCGGCAAGCACACGACG-AGAGTAGATGTTGCTAGTGTATGGCTCGAAGCACTCGTTGA 125137 Query 118219 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 |||| ||| || | ||||||||| || ||||| ||||| | |||||| ||| |||| Sbjct 125136 AGCCCATGATCTGCGATGTGGAGGCAGTAGGCATTGGTGCAACCAGAAGGGAGTTGCGGA 125077 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTG-----AGCTTTGT 118333 ||| | | || ||||||| ||||||||||| || | || | || Sbjct 125076 CACCGTGCTGAGCGATCTTGGCCTTGAGCGCGTCCCAGTCCCAGAGGTCTGAAGGTGTGA 125017 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 | |||| |||| || |||| || || | || | || || ||||| | || Sbjct 125016 CGCCCC-----ACATCTCGTACTGAAGTTCGCCCTTTGAAACCGGGGAGCCCTCGTACGT 124962 Query 118394 CTCATATGGGCCCTCAACCTCC--GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 118451 ||| ||||| || | | | | || | ||| | || ||| || ||||| || Sbjct 124961 CTCGTATGGACCA--AGCTTGCTAGCAAGGTCGCACGATGCGGTGAGCGCAGCGTGGTAG 124904 Query 118452 ATTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510 || || || || || | | |||| || | |||||| || ||||| | | || Sbjct 124903 ATGGTCTCGAAGATCTGGACGTTCAGGTGACG-GGCCTCTGGAGACTCAAAAGGCATGCG 124845 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 | || |||| || ||||| ||||||||| || ||||| | || | ||| Sbjct 124844 TAGAGCCAGGAAAGCATCAGCAAGACCGCTGACACCGAGACCGATTGGTCTGTGGCGCAT 124785 Query 118571 ATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 || |||| || ||| ||| || || || ||||| | | | || | Sbjct 124784 GTTGCTCTTCTTCGC---CTCAGGCACTGGGTAGTGGTTGACTTCGATGATCTTGTTCAA 124728 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT-CT 118686 || |||||||| || | | || || ||||| || | || |||| || || || Sbjct 124727 GTTCTTGGTGACGACTTGCACAACCTCGTGGAGCTTCTCAAAGTCGAAAC-GCTCGTTCT 124669 Query 118687 CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 118746 | || ||| || | || || || | || || || || ||||| | | ||| || Sbjct 124668 CAAGATCGACGTAGGTTGGCAGAGCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTG 124609 Query 118747 TATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCT 118806 | |||||||| || || || ||||||||||| |||||||| || || || | ||||| Sbjct 124608 GTGCGGTGTACTCAATGATCTCAGTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCT 124549 Query 118807 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 | || || ||| ||| ||||||||||| |||||| | || || ||||| | Sbjct 124548 TCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAG 124489 Query 118867 TTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCC 118926 | |||| | | ||||| | |||||| | ||| | ||||| | | || | Sbjct 124488 TCTGGGCTTCCAAGATAGCATACCAGACCTTTTGAGCGCGGACAGTCTCACGTCCACGAC 124429 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 | ||| |||||| ||||| || | || ||||| ||||| | || | ||| | Sbjct 124428 CTTCTCTCTCGTAGCGGGTGTACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGAC 124369 Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 119046 | || || || ||||| | ||| | ||||| | | || || |||||||||| Sbjct 124368 CAGGGCACTCATTGGGGCACATGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGA 124309 Query 119047 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 119106 | || ||||||||||| || || |||| ||||| || || |||| || | || | Sbjct 124308 ACAGATCTGGGATCCAAAGAGCGAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGT 124249 Query 119107 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 119166 | || || | |||| ||| |||| ||| |||||||| || || ||||| | | Sbjct 124248 GGTTCTTGCGGAGGTCCATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGG 124189 Query 119167 CGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 ||| || | | |||| ||| | |||| ||||| | |||||| || Sbjct 124188 CGA---ACGCGCCAGGACGCTTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGT 124132 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACT 119280 | || || | ||| || |||| ||||| |||| ||| ||||| || ||| || Sbjct 124131 AGACGCGCAACATCGGGATGAGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATC 124072 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | | || | || | |||| || || |||||||| || || ||| ||||| | Sbjct 124071 CAGTAGCACGGATCTTGTGGCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGG 124012 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 |||| | | || || ||||||| || || || |||| |||| | |||| | || Sbjct 124011 CGCAAGTCTTCAGTGTGTCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGA 123952 Query 119401 AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 |||| | || || | | || ||||||||| |||| || || || | ||||| Sbjct 123951 AGCATGAAGCCAACTGTGCATTCGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTG 123892 Query 119461 TGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519 |||| || | | ||||| | || ||||||||| | | |||| || || || ||| Sbjct 123891 TGAA-GTATTTGTTCGACATGTAGTTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCG 123833 Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 || || || | | || ||||| | ||||| || ||| Sbjct 123832 TGGATTCCAACAGCCACACGCATGATCATGTGCTGTGGT 123794 >seq680 Length=821847 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||||||||||||||| || || |||||| || || | ||||||||| |||||| Sbjct 340841 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTC 340782 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||||||||||| || | |||||||| ||||||||||| ||||| ||| Sbjct 340781 TTCAACCAGAAGATGGACGCGAATGAGCCGGAGAAGAAGATACCCTCGACA 340731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420164294200