Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq411 356 3e-93 seq680 113 5e-20 >seq411 Length=240905 Score = 356 bits (394), Expect = 3e-93 Identities = 1145/1760 (65%), Gaps = 55/1760 (3%) Strand=Plus/Plus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| || ||| || | ||||||| || || || || ||||| |||||||| || Sbjct 123789 GAGAGACCACAGCACATGATCATGCGTGTGGCTGTTGGAATCCACGGCGACGATATC--- 123845 Query 19157 CGAGTCCGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCC 19212 ||| |||| ||||| ||| || ||| | || | |||||| ||||| |||| Sbjct 123846 -GAGGCCGCCATTGAGACCTACAACTACATGTCGAACAAATACTTCACACACGCTTCGCC 123904 Query 19213 GACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTAT 19272 || || |||| ||| |||||| || | ||| || | || ||| | | | || Sbjct 123905 TACACTGTTCAGCGCTGGTACGCCGAATGCACAGTTGGCTTCATGCTTCTTGATCGACAT 123964 Query 19273 GAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAA 19332 ||||||||||||||||||||| |||||||| || || ||| ||||| ||||| || Sbjct 123965 GAAGGATGACAGCATTGAGGGTATCTACGACACACTGAAGACTTGCGCCATGATCTCGAA 124024 Query 19333 GTGGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAA 19392 | | || ||||| || | ||||| || ||||| | | ||| || || Sbjct 124025 GAATGCTGGTGGTATTGGCCTGAACTGCCACAAGATCCGTGCTACTGGATCATACATTGC 124084 Query 19393 TGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGC 19452 || || ||||| | || | ||| || |||| ||| | ||||||| ||| ||||| || Sbjct 124085 AGGCACAAACGGCACATCCAATGGTCTCATCCCGATGTTGCGCGTCTACAATAACACTGC 124144 Query 19453 CAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCC 19512 | | || ||| |||| || ||| ||| || ||| |||||||||||||||| ||||| Sbjct 124145 CCGCTATGTCGACCAAGGTGGCAACAAGCGTCCTGGCGCGTTCGCCATCTACCTAGAGCC 124204 Query 19513 ATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGAT 19572 ||||||||| || ||||| ||| | || || ||| |||||| || | ||||| | Sbjct 124205 ATGGCACGCAGATGTCATCTCCTTCATGGACCTCCGCAAGAACCACGGAAAGGAGGAAGT 124264 Query 19573 GCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGA 19632 ||| || || || ||| || | ||||| || || || |||||| || || || Sbjct 124265 GCGTGCACGTGATCTGTTCTTCGCTCTTTGGATCCCAGATCTGTTCATGAAGCGTGTCGA 124324 Query 19633 GAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTA 19692 ||| ||||||| || |||||||| | || |||||||| || | || || || Sbjct 124325 AGCCAACGCAGAATGGACACTCATGTGCCCCAATGAGTGCCCTGGTCTCGCTGATGTGTA 124384 Query 19693 CGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGT 19752 ||| || | |||| | ||| ||||| |||| || || | || || | | || Sbjct 124385 CGGTGACGAGTTCGAGGAGCTGTACACCCGCTACG-AG---AGAGAAGG-TCGTGGACGT 124439 Query 19753 G-----GTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGC 19807 | ||||| || | | |||||| | || | || |||| ||||| || Sbjct 124440 GAGACTGTCCGCGCTCAAAAGGTCTGGTATGCTATCTTGGAAGCCCAGACTGAGACTGGT 124499 Query 19808 ACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGC 19867 ||| | |||| ||||||||| || || ||| |||| || ||||||||| |||| Sbjct 124500 GGACCTTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGA 124559 Query 19868 GCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACT 19927 |||||||| |||||| |||| ||||| ||||| ||| || || |||||| Sbjct 124560 ACGATCAAGAGTTCCAACTTGTGCACTGAGATCATTGAGTACACCGCACCAGACGAGGTC 124619 Query 19928 GCCGTGTGTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTC------AAGGCCTCCTC 19980 |||||||| || || || || || ||| ||||| || | |||| || | Sbjct 124620 GCCGTGTGCAACCTTGCATCTCT-TGCTCTGCCAACCTACGTCGATCTTGAGAACGAGCG 124678 Query 19981 CTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGT 20040 |||||||||| || | ||||||| | |||||||| || |||| | Sbjct 124679 TTTCGACTTTGAGAAGCTCCACGAGGTTGTGCAAGTCGTCACCAAGAACTTGAACAAGAT 124738 Query 20041 CATCGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCG 20097 |||||| ||| ||||| | | |||||| | ||| || ||||||||| | Sbjct 124739 CATCGAAGTCAACCACTACCCAGTGCCTGAGGCGAAG---AAGAGCAACATGCGCCACAG 124795 Query 20098 GCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATT 20157 || |||| |||| ||| || || || || | |||| || || || | | || Sbjct 124796 ACCAATCGGTCTCGGTGTCAGCGGTCTTGCTGATGCTTTCCTGGCTCTACGCATGCCTTT 124855 Query 20158 CGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGC 20217 || ||| |||| || | || ||| ||||||||| || | |||||||| || Sbjct 124856 TGAGTCTCCAGAGGCCCGTCACCTGAACGTCCAGATCTTCGAGACCATCTACCACGCTGC 124915 Query 20218 CCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTC 20277 ||| | ||||||||| || || | || || || |||||||||| | |||| || Sbjct 124916 GCTCACCGCATCGTGCGACCTTGCTAGCAAGCTTGGTCCATACGAGACGTACGAGGGCTC 124975 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCAC----TGAGA---ATG 20330 || | || |||| || ||| || |||||||||||||| | ||| || Sbjct 124976 CCCGGTTTCAAAGGGCGAACTTCAGTACGAGATGTGGGGCGTCACACCTTCAGACCTCTG 125035 Query 20331 AGTTTTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCG 20390 | | ||| ||| ||||||| ||||| ||||| | |||||||| | || | Sbjct 125036 GGACTGGGA-CGCGCTCAAGGCCAAGATCGCTCAGCACGGTGTCCGCAACTCCCTTCTGG 125094 Query 20391 TCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGC 20450 | || || ||||| || ||||| || | ||||||||||| ||||||| ||||||| Sbjct 125095 TTGCACCAATGCCTACTGCCTCCACATCGCAGATCATGGGCTTCAACGAGTGCTTCGAGC 125154 Query 20451 CGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACA 20510 | ||||| | ||||||||||| |||||| || ||||| || ||| | || || Sbjct 125155 CATACACTAGCAACATCTACTCTCGTCGTGTGCTTGCCGGAGAATTCCAAGTCGTCAA-- 125212 Query 20511 AGCACCTGGTCCGCGA-----CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAA 20565 | | |||| || || | || | ||| ||||||| || || ||||| Sbjct 125213 --CCCATGGTTGCTGAAGGATCTCGTCGACCGTGGAT-TGTGGTCTGAGAACATGAAGAA 125269 Query 20566 TGAAATTGTCCGAGCCGGCGGGAGCGT-CCAGGCATT--GGATATCCCCCAGAACCTCAA 20622 || || | |||||| ||| | | ||||| | | || || | ||||||| Sbjct 125270 CCGCATCATCGCCGACGGCGGTTCCGTGCAACGCATTCCGAACATTCCGGACGACCTCAA 125329 Query 20623 GGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGA 20682 || | |||| ||| || ||||||||| ||| | ||| | | ||||| || || Sbjct 125330 GGCGTTGTACAAGACTGTCTGGGAAATCAGTCAGCGCAACATTGTTCAAATGGCCGCGGA 125389 Query 20683 TCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCT 20742 ||||| |||| |||||| || || || | || || | || || | || | | | Sbjct 125390 CCGCGGTGCCTTCATCGATCAATCTCAAAGCTTGAACATCCACTTGAAGGAGCCCACCAT 125449 Query 20743 GGCGAAGCTGAGCTCCATGCATATGTAC-GGCTGGCACAAGGGGCTCAAGACGGGCATGT 20801 || ||| | | | |||||| | ||| |||||| | || || ||||| ||||||| Sbjct 125450 GGGCAAGATCACCAGCATGCA-CTTTACTGGCTGGAAGCTTGGCCTGAAGACCGGCATGT 125508 Query 20802 ACTATCTGCGGACCCGAGCC 20821 |||| || || || | |||| Sbjct 125509 ACTACCTCCGTACACAAGCC 125528 Score = 316 bits (350), Expect = 2e-81 Identities = 917/1401 (65%), Gaps = 24/1401 (2%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| |||||||| ||||||| ||||||||||| | || || Sbjct 125174 GTAGATGTTGCTAGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTGGA 125115 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || ||||| ||||| ||||| || || || || | ||| ||| ||||| | | Sbjct 125114 GGCAGTAGGCATTGGTGCAACCAGAAGGGAGTTGCGGACACCGTGCTGAGCGATCTTGGC 125055 Query 78654 CTTTAGGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| || ||||||| | || | | || |||||||| || ||||| Sbjct 125054 CTTGAGCGCGTCCCAGTCCCAGAGGTCTGAAGGTGTGACGCCCCACATCTCGTACTGAAG 124995 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 |||| || |||| || |||| | |||||||||| | || || | || || Sbjct 124994 TTCGCCCTTTGAAACCGGGGAGCCCTCGTACGTCTCGTATGGACCAAGCTTGCTAGCAAG 124935 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 ||||| || || || || |||||||| | | ||||||||| ||| || | Sbjct 124934 GTCGCACGATGCGGTGAGCGCAGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAGGTG 124875 Query 78828 GCGCGCCT-TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCT 78886 || |||| ||| | || || | | || || || ||| |||| || || || Sbjct 124874 ACGGGCCTCTGGAGAC-TCAAAAGGCATGCGTAGAGCCAGGAAAGCATCAGCAAGACCGC 124816 Query 78887 GGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC---G 78943 ||| |||| | |||| |||| |||||||||||||||||| |||||| | | | Sbjct 124815 TGACACCGAGACCGATTGGTCTGTGGCGCATGTTGCTCTTCTT---CGCCTCAGGCACTG 124759 Query 78944 GGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGT 79003 |||| ||| ||||||| ||||| ||| |||||||| | ||||||| Sbjct 124758 GGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTCTTGGTGACGACTTGCACAACCTCGT 124699 Query 79004 ACAATTTGGCGAAATCAAAATGAT--TTCCTTTGATGAAAGTCGGTAGGCACAGC----G 79057 | || | || || ||| | | ||| ||| | || ||| |||| ||| | Sbjct 124698 GGAGCTTCTCAAAGTCGAAACGCTCGTTCTCAAGATCGACGTAGGTTGGCAGAGCAAGAG 124639 Query 79058 ATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACA 79117 |||| |||||||||||||| |||||| || | ||| ||||| || ||||||| Sbjct 124638 ATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATCTCAGTGCACA 124579 Query 79118 AATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCT 79177 | || || |||||| || |||| |||||||||||||||||| ||| || |||| Sbjct 124578 AGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCT 124519 Query 79178 TGTAGCACATGTACGGCGTCCCGGTCTCAACCTGA-CTCTTGAGAACGCCGTCCCAGATG 79236 ||||| |||| | || || |||||| ||| || ||| || | ||||| Sbjct 124518 TGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCA-TACCAGACC 124460 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTAC-CGACCCTGTGCGACGTACGTCCGGTACAACTC 79295 | | || |||||| || | || | ||||| | | |||| ||||| ||| Sbjct 124459 TTTTGAGCGCGGACAGTCT-CACGTCCACGACCTTCTCTCTCGTAGCGGGTGTACAGCTC 124401 Query 79296 GTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTG 79355 | ||| | || || || ||||| | || || |||||||| | |||||||| || Sbjct 124400 CTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGGCACATGAGTGT 124341 Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415 ||| || ||| || || || |||||| || || |||||||| || || ||| Sbjct 124340 CCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAAAGAGCGAAGAA 124281 Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475 || || || ||||| ||||| | || |||||| || || || | ||| || Sbjct 124280 CAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCCATGAAGGAGAT 124221 Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 || || |||||||| ||||| || ||||||||||||| || |||||| ||| || Sbjct 124220 GACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGCTTGTTGCCACC 124161 Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGC 79595 |||| ||| || ||||| ||||| ||| | || || | ||| || | || || | || Sbjct 124160 TTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATGAGACCATTGGA 124101 Query 79596 GACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCC 79655 |||||| || || || || || | || || || || ||||| | || Sbjct 124100 TGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTTGTGGCAGTTCAGGCC 124041 Query 79656 GATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTC 79715 || || || | ||| ||||| ||||| ||| || || |||||||| ||||| Sbjct 124040 AATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTCGTAGATACCCTC 123981 Query 79716 GATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACC 79775 || ||| |||||||| ||| || |||||| | || ||||| || |||||| Sbjct 123980 AATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGCATTCGGCGTACC 123921 Query 79776 GGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGT 79835 ||| |||| || || |||| ||||| |||||| | || | ||| | ||| || Sbjct 123920 AGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACATGTAGTTGTAGGT 123861 Query 79836 CTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTA 79895 ||| || || | || |||||||||||||| || || || || ||||||| | || Sbjct 123860 CTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACACGCATGATCATGTG 123801 Query 79896 CTGGGGCGTCTCGCCGACATT 79916 ||| || ||||| | || || Sbjct 123800 CTGTGGTCTCTCGGCAACTTT 123780 >seq680 Length=821847 Score = 113 bits (124), Expect = 5e-20 Identities = 296/438 (68%), Gaps = 14/438 (3%) Strand=Plus/Plus Query 59988 ATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 || || ||||| ||| || || || ||||||||||| ||||| ||| | || ||||| Sbjct 340717 ATCGCCTTTGC-TGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCGTCCATCTTCTG 340775 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 | | || |||||||| |||||| | ||||| | |||||||||||||| || ||||| || Sbjct 340776 GTTGAAGAAGCGTGGTCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 340835 Query 60107 CGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCC 60165 ||||||| | || || || || || | ||| | || ||||| | || | ||| Sbjct 340836 CGAGGGCATGCACACTGACTTCGC-TTGCCTGCTGTTCTCTCACCTCAAG--AACAAGCC 340892 Query 60166 CTTCCAAG--GATATTCACAAGATTGTTCAGTG--GGCTTGTGAAGTGGAGAGCGAGTTC 60221 | ||||| | | | ||| | || ||| ||| || | ||| || ||| Sbjct 340893 C-GCCAAGTCGGTCGTGCAAAGCATCATC-GTGGAGGCCGTTGCCATTGAGCAAGAATTC 340950 Query 60222 ATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTAC 60281 | || || || || || ||| || | || ||| ||||| ||| |||||| Sbjct 340951 TTGACCGATGCTCTGCCTTGCGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTAC 341010 Query 60282 ATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATT-TACGGCGT 60340 ||| |||||||||| ||||| || | || | | | | || | | || ||| || Sbjct 341011 ATTGAGTTTGTCGCTGACCGACTGCT-GCTCGCTCTTGGCAACCAAAAGTTCTACAACGC 341069 Query 60341 GAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGA 60400 | ||||| ||||||| ||||||| |||||| | | || |||||||||||||| || Sbjct 341070 CACCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGA 341129 Query 60401 GAAGCGGGTCGGGGATTA 60418 |||||| || || || || Sbjct 341130 GAAGCGTGTTGGCGACTA 341147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511463990800