Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq411 206 3e-48 seq638 105 7e-18 >seq411 Length=240905 Score = 206 bits (228), Expect = 3e-48 Identities = 509/760 (67%), Gaps = 18/760 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCG----TGAGACG 53248 ||||||| || || | || |||||||| ||||| || || | ||| |||||| Sbjct 123808 TCATGCGTGTGGCTGTTGGAATCCACGGCGACGA-TAT---CGAGGCCGCCATTGAGACC 123863 Query 53249 TACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 ||| ||| ||| | || ||||| || ||||| |||| || ||||||| ||||||| Sbjct 123864 TACAACTACATGTCGAACAAATACTTCACACACGCTTCGCCTACACTGTTCAGCGCTGGT 123923 Query 53309 ACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGAC 53368 ||| | | ||| || | |||||| || | | |||||||||||| || || Sbjct 123924 ACGCCGAATGCACAGTTGGCTTCATGCTTCTTGATCGACATGAAGGATGACAGCATTGAG 123983 Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428 || |||||||| || || ||| || ||| ||||| ||| | |||||||| || Sbjct 123984 GGTATCTACGACACACTGAAGACTTGCGCCATGATCTCGAAGAATGCTGGTGGTATTGGC 124043 Query 53429 ATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | ||||| || ||||||| | || || || || || |||||| || Sbjct 124044 CTGAACTGCCACAAGATCCGTGCTACTGGATCATACATTGCAGGCACAAACGGCACATCC 124103 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 |||| || | || ||| | ||||||| ||| ||||| ||||| || ||| |||| ||| Sbjct 124104 AATGGTCTCATCCCGATGTTGCGCGTCTACAATAACACTGCCCGCTATGTCGACCAAGGT 124163 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || ||||| || |||||||||||||||| ||||| |||||||| || | || Sbjct 124164 GGCAACAAGCGTCCTGGCGCGTTCGCCATCTACCTAGAGCCATGGCACGCAGATGTCATC 124223 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT 53667 || | || || || ||| || || | || || |||| ||| ||||| ||||| Sbjct 124224 TCCTTCATGGACCTCCGCAAGAACCACGGAAAGGAGGAAGTGCG-TGCACGTGATCTGTT 124282 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGG 53725 ||||| ||||| || || || |||||| || ||| |||| ||| || ||| Sbjct 124283 CTTCGCTCTTTGGATCCCAGATCTGTTCATG--AAGCGTGTCGAAGCCAACGCAGAATGG 124340 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAAC 53785 || |||||||| || |||||||| || ||| | ||| |||||||| ||||| | Sbjct 124341 ACACTCATGTGCCCCAATGAGTGCCCTGGTCTCGCTGATGTGTACGGTGACGAGTTCGAG 124400 Query 53786 GAGATGTATCGGACG-TACG-CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 ||| |||| | || |||| || ||| | || | ||| ||| || | Sbjct 124401 GAGCTGTA-CACCCGCTACGAGAGAGAAGGTCGTGGACGTG-AGACTGTCCGCGCTCAAA 124458 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 |||| ||| |||| ||| | | |||| ||||| || || | |||| ||||| Sbjct 124459 AGGTCTGGTATGCTATCTTGGAAGCCCAGACTGAGACTGGTGGACCTTTCATGCTCTACA 124518 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||| | | |||| |||||||||||||||||| |||| Sbjct 124519 AGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 124558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||||| || || || |||||||| || || || || | |||||||||||| | Sbjct 125079 CGCAACTCCCTTCTGGTTGCACCAATGCCTACTGCCTCCACATCGCAGATCATGGGCTTC 125138 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| |||||||| ||||| | |||||||||| Sbjct 125139 AACGAGTGCTTCGAGCCATACACTAGCAACATCTAC 125174 >seq638 Length=503197 Score = 105 bits (116), Expect = 7e-18 Identities = 295/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 |||||||| ||||| || |||||||| || || ||||| ||||| | || ||| || Sbjct 189038 CCAGTTCCAATACCATCAGCACCATTGATGAGGATCATTGGCACAATTGGGCTGTACAAT 188979 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || || || | | || || ||| | |||| | | ||| | || || || Sbjct 188978 TCTGGTTCGATAGTGTGGCCATCATCCTCGTTGTACCGCAAAAGCGCCTCATCCTTCTGA 188919 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 ||||| | | | | |||| || | ||| |||| ||||||| ||| |||||| Sbjct 188918 TCGAAAAGGCGGCGCGCGAAAGGTGACAGTCTCGTGTAAATATAACGAGCGCTGGCAGCA 188859 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || | ||||| ||||| | ||| || | ||||| ||||||| || |||| |||| Sbjct 188858 TCGCTACCACCCTGGAGACGGGAACCAAAGTTACCACTTGGCTCCAGAAGATTCATGTTG 188799 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 |||| ||||||||||| || || | |||||| || ||| || || ||||| Sbjct 188798 TTGGATCCCACAAAGTTCTGTGCAAGAGCGACAATGGTTTGTTGAAGCGAAGCATCACCG 188739 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 | |||||| ||| | | | || || || |||| | ||||| || || | Sbjct 188738 TATGCATACGCAGTCAGACCAGAGACCAGACCAGCAAGCTCGACTACCTTGATATCCTTC 188679 Query 117512 GTCAGGTT-CTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 ||| ||| | || |||| || ||| || ||||| ||||||| ||||| || || || Sbjct 188678 TTCAAGTTGCGTCGGAAGGC-GGTATACATGACCTTTCGCTGACCAGGCTTGAGGCCGTC 188620 Query 117571 CGCCACGTGAGGGATCGAACGCTTGATGTC 117600 | ||| ||||| || ||| || |||| Sbjct 188619 GACAACGGACGGGATGGATCGCATGTTGTC 188590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202695811000