Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq455 109 3e-19
seq530 100 2e-16
>seq455
Length=1194790
Score = 109 bits (120), Expect = 3e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||| | |||||| |||||||| |||||||| ||||| || || ||
Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||| ||||| || ||||| || || || ||||| |||||||| ||
Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTT 1130903
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| |||||| || || ||||||||||| || ||||| || |||||
Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 1130592
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || | || || | || || || || || || | ||||| |||||||| ||
Sbjct 1130593 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 1130652
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 1130653 ATACCCTCCTTGTCTTGGATCTT 1130675
Score = 86.0 bits (94), Expect = 4e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || | |||||| ||| |||||| || ||||| ||||| || || || ||
Sbjct 1130998 AGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGG 1131057
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || ||||| || || || || || | |||||| |||||||| || | ||||||
Sbjct 1131058 CCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCC 1131117
Query 34609 TTGTC 34613
|||||
Sbjct 1131118 TTGTC 1131122
>seq530
Length=291
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| |||||| || || ||||||||||| || ||||| || |||||
Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 98
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || | || || | || || || || || || | ||||| |||||||| ||
Sbjct 99 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 158
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 159 ATGCCCTCCTTGTCTTGGATCTT 181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314722139433185
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |