Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq455 109 3e-19 seq530 100 2e-16 >seq455 Length=1194790 Score = 109 bits (120), Expect = 3e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||| |||||||| |||||||| ||||| || || || Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||| || ||||| || || || ||||| |||||||| || Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTT 1130903 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| |||||| || || ||||||||||| || ||||| || ||||| Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 1130592 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || | || || || || || || | ||||| |||||||| || Sbjct 1130593 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 1130652 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 1130653 ATACCCTCCTTGTCTTGGATCTT 1130675 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| ||| |||||| || ||||| ||||| || || || || Sbjct 1130998 AGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGG 1131057 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || || || || || | |||||| |||||||| || | |||||| Sbjct 1131058 CCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCC 1131117 Query 34609 TTGTC 34613 ||||| Sbjct 1131118 TTGTC 1131122 >seq530 Length=291 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| |||||| || || ||||||||||| || ||||| || ||||| Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 98 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || | || || || || || || | ||||| |||||||| || Sbjct 99 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 158 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 159 ATGCCCTCCTTGTCTTGGATCTT 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722139433185