Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq455 149 1e-30
seq653 113 1e-19
seq671 111 4e-19
>seq455
Length=1194790
Score = 149 bits (164), Expect = 1e-30
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | ||| || ||| ||| || |||||||| || || | ||
Sbjct 1130535 TCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAG 1130594
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||| |||| ||||||||| |||||||| ||||| || ||||| || || |
Sbjct 1130595 TGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGAT 1130654
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| |||||||| |||||||| |||||||| ||||||||||| || ||| |||||
Sbjct 1130655 ACCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACCTC 1130714
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || |||||||| || ||||| ||||| || || | |||||
Sbjct 1130715 CAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
Score = 136 bits (150), Expect = 9e-27
Identities = 160/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| || || ||||||||||| || |||| || || | || |||
Sbjct 1130776 AGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCT 1130835
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| | ||| || ||||| || || | || ||||||||
Sbjct 1130836 TCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCT 1130895
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| || || || ||||| ||||| ||| || ||||| ||||||||
Sbjct 1130896 TGGATCTTGGACTTGACATTGTCGATAGTGTC---GCTCGACTCGACCTCAAGAGTGATG 1130952
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || ||||| ||||| || || | ||||||
Sbjct 1130953 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 134 bits (148), Expect = 3e-26
Identities = 145/191 (76%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || |||||||| || |||||||| ||||| | ||||| | || ||
Sbjct 1131004 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCC 1131063
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || || || || ||||| ||||||| || |||||||||
Sbjct 1131064 TCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 1131123
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079
|| ||||| || ||||| ||||||||||| ||| || |||||||| |||||
Sbjct 1131124 TGAATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGA---CTCCACCTCGAGGGTGATA 1131180
Query 211080 GTCTTTCCCGT 211090
||||| || ||
Sbjct 1131181 GTCTTGCCGGT 1131191
>seq653
Length=579839
Score = 113 bits (124), Expect = 1e-19
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || |||||||| || |||||||| || || || || | |||||
Sbjct 344597 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCC 344656
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||| || || | ||| |||||||||
Sbjct 344657 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 344716
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057
|| ||||| || || || ||||||||||| ||
Sbjct 344717 TGAATCTTGCTCTTGACATTGTCGATGGTGTCGGA 344751
>seq671
Length=186828
Score = 111 bits (122), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | || || | ||||| |||| ||||| || ||||||||
Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || ||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
||||| || || || ||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 53807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159123113569925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |