Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq455 134 3e-26
seq671 107 5e-18
seq653 100 7e-16
seq530 98.7 2e-15
>seq455
Length=1194790
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||| || | ||| || ||| || || |||| ||||| || | | ||
Sbjct 1130538 ACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGT 1130597
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | |||||| || |||||||| || || || ||||| || || |||||
Sbjct 1130598 GCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACC 1130657
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| |||||| ||||||||||| || | ||| || || ||
Sbjct 1130658 CTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACCTCCAA 1130717
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||||||||| || | || || | ||| | ||||||
Sbjct 1130718 CGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
Score = 118 bits (130), Expect = 3e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| ||||| || || |||| |||||||||| || || | || ||
Sbjct 1131004 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCC 1131063
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| |||||||| || || || || ||||| || ||||| || ||||||||
Sbjct 1131064 TCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 1131123
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || ||||||||||| | ||||| || | ||||| |||
Sbjct 1131124 TGAATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTC 1131183
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 1131184 TTGCCGGTCA 1131193
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||||||||| ||||| ||||||| ||||| || | | ||| | || |||
Sbjct 1130776 AGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCT 1130835
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || |||||||| | || || ||||| || || || || |||||||||
Sbjct 1130836 TCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCT 1130895
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||| ||||| | || || || | ||||| |||
Sbjct 1130896 TGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTC 1130955
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 1130956 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
>seq671
Length=186828
Score = 107 bits (118), Expect = 5e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| || ||| | ||||| || | ||||| |||||||||||
Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 53926
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || || ||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 53925 AAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 53866
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||||| || || | ||||| || | ||||| |||||||| ||
Sbjct 53865 ATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGT 53822
>seq653
Length=579839
Score = 100 bits (110), Expect = 7e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | |||||| ||||| || || |||| ||||| ||| | ||| | |||||
Sbjct 344597 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCC 344656
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || || || || ||||||||
Sbjct 344657 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 344716
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656
|| ||||| ||| ||| ||||||||||| ||
Sbjct 344717 TGAATCTTGCTCTTGACATTGTCGATGGTGTCGGA 344751
>seq530
Length=291
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||| || | ||| || ||| || || |||| ||||| || | | ||
Sbjct 44 ACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGT 103
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | |||||| || |||||||| || || || ||||| || || || ||
Sbjct 104 GCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATGCC 163
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| ||| ||| ||||| ||||| | || || || |
Sbjct 164 CTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAG 223
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | ||| | |||||
Sbjct 224 AGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192501481749830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |