Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq660 107 1e-18 seq679 82.4 6e-11 >seq660 Length=72284 Score = 107 bits (118), Expect = 1e-18 Identities = 234/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 || |||||||| ||| ||||||||||||||| | ||||||||| ||| || | | Sbjct 46084 GGATTCCAGGCAGACATGATGATGCGCCTGTCGTAAGGGTTGTTCTTGAGCTTGTGAATG 46025 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504 | | |||||||||||| || || | ||||| |||| ||||||| Sbjct 46024 ACCTCAGCCAGCTGATCCACTCCTTGTCCAGTATAGTCGGTGTGGCAGTCCTTGTACTCG 45965 Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 || |||||||||||||||||||||||||| || || || ||||| || ||||| | ||| Sbjct 45964 GCACCGAAATGCCTCCATTGGAACCCGTAGACTGGCCCAAGGTCGCCTTCTTCACGGTGG 45905 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 27624 | ||| |||| | | |||||||| || || | ||||| || | || | Sbjct 45904 GAAAGGCCGACGCTGTCGAGGTATTCTCTGGATCCATTACCATCCCAAATGTGAACGTTC 45845 Query 27625 T--TCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG--ACGAACCACAGCAGCTCCTC 27680 | || |||||| |||| | | ||| | | | ||| ||||||||||||||||| | Sbjct 45844 TGGTCCTGGAGAG-TCTTCGCA--TTG-GTATCTGCTGCAACGAACCACAGCAGCTCTGC 45789 Query 27681 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 || || || |||||| | || || || ||||| || || Sbjct 45788 TACCACCGCGCGTAGAAAGACGCGTTTCGTGGTAAGGAGTGGCAA 45744 >seq679 Length=230803 Score = 82.4 bits (90), Expect = 6e-11 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTCCT 48568 |||||||||||||| ||| | | | |||| | || ||||| |||||||| ||| Sbjct 199369 TCGTCAAGGTGAGGACGAGAGTGACAAAGGTCCCACAAATCGGTGATAAGTTTGCTTCCC 199428 Query 48569 -TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCG 48625 |||||| || ||||| ||| || | || ||| |||||||||||||| ||| Sbjct 199429 GTCACGGA-CAGAAGGGTACAATCGGTATCA--CTTACCGACAGGAGGACATGCCGTTCA 199485 Query 48626 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCC 48675 | |||||| | ||||||| ||||||||||||||||||| ||||| Sbjct 199486 GCGCGGACGGTCTCACGCCCGACATCATCATCAACCCCCACGCTATTCCC 199535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498440947295