Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq411 168 9e-37 seq680 127 3e-24 >seq411 Length=240905 Score = 168 bits (186), Expect = 9e-37 Identities = 488/744 (66%), Gaps = 14/744 (2%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||| || || | || || ||| || || || || || | |||||| | | ||| Sbjct 124426 TCTCTCTCGTAGCGGGTGTACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCA 124367 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 ||||| ||||| |||||||| | || ||| || | | | | || || ||||| || Sbjct 124366 GGGCACTCATTGGGGCACATGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAAC 124307 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 ||||| || ||||| ||||| | || ||||| || | | ||| || ||||| Sbjct 124306 AGATCTGGGATCCAAAGAGCGAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGTGG 124247 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 ||||| || || | || || | ||| | |||||||| ||||| || || || Sbjct 124246 TTCTTGCGGAGGTCCATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCG 124187 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | ||||| || || || || || || || | ||| | ||| |||||||| || || Sbjct 124186 AACGCGCCAGGACGCTTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACG 124127 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 | |||||| || || | ||| || ||||| || ||||| || | ||| || |||| | Sbjct 124126 CGCAACATCGGGATGAGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTA 124067 Query 78258 GCGCGAATATTACTAATGG-ATATC---CCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 || || || || ||| | || || || || || || |||| || || | || Sbjct 124066 GCACGGATCTTG----TGGCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGC 124011 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 |||| |||| ||| |||||||||||||| || ||||||||| |||||| | | || Sbjct 124010 GCAAGTCTTCAGTGTGTCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAA 123951 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || || || || || || || || | || | ||| || || || || || Sbjct 123950 GCATGAAGCCAACTGTGCATTCGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGT 123891 Query 78434 AAACCATTT-TTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGAT 78492 || |||| ||| | |||| ||||| || ||||| || | || || || | Sbjct 123890 GAAGTATTTGTTCGACATGTAG-TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGT 123832 Query 78493 GAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTA 78552 | ||||| || || |||||||| | ||| ||||| ||||| || | || || | Sbjct 123831 GGATTCCAACAGCCACACGCATGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAA 123772 Query 78553 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 78610 | | ||||||||| ||||| || || |||||||| || | ||| ||||| || Sbjct 123771 TGCGGAGCAAGTATGAGCGTTCCAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TC 123714 Query 78611 TCTCTCGTAAATAATAACAGAATT 78634 ||| || || | ||| |||| || Sbjct 123713 TCTGTCATAGACAATGGCAGAGTT 123690 >seq680 Length=821847 Score = 127 bits (140), Expect = 3e-24 Identities = 338/515 (66%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || ||||| || | ||| || ||||| || || | ||| || || | |||| Sbjct 340820 TCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCG 340761 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| || || || || || ||||| ||| | | || | || || Sbjct 340760 AATGAGCCGGAGAAGAAGATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAA 340701 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | || |||| ||||| || ||||||| |||||||| | | |||||| Sbjct 340700 GTAGAGTCCTTGTCCGAGATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGG 340641 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || | || || || || ||||| | || | ||| || | | ||| || || Sbjct 340640 ATGTTGTCGATGGCGTTGAAGAGGTATGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCG 340581 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || || | |||||||| || || || || ||||| || ||||| || Sbjct 340580 ATGAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 340521 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 |||| || || | || || ||||| | | ||||| || ||| ||||| || || Sbjct 340520 CATCGTGCCTCCGGTATTTGCACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACA 340461 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || || || || || || ||||| | || ||| || || | |||| | | Sbjct 340460 ATGCCGTCGGATGCGGCGAAGAATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCA 340401 Query 48600 GTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656 | ||| || |||||||| | || ||| || || | ||| | ||||| || ||||| Sbjct 340400 TTGAGTCGCTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAG 340341 Query 48657 AATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||||||||||| || || || ||||| |||||||| Sbjct 340340 AATGATGCCTCGGCCTTCTTGTACATGTTCCATAT 340306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651910864800