Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq411 179 5e-40 seq680 118 2e-21 >seq411 Length=240905 Score = 179 bits (198), Expect = 5e-40 Identities = 621/957 (65%), Gaps = 14/957 (1%) Strand=Plus/Minus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 ||||| | |||||| || || || ||||| ||||| | | || || | || ||| Sbjct 124648 AGAGCAAGAGATGCAAGGTTGCACACGGCGACCTCGTCTGGTGCGGTGTACTCAATGATC 124589 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||||| | || || |||||| ||||| || || | ||||||||||| ||| Sbjct 124588 TCAGTGCACAAGTTGGAACTCTTGATCGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTG 124529 Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450 | ||||| || || | || || ||||| ||| |||| | ||| | |||| Sbjct 124528 GCAGCATCCTTGTAGAGCATGAAAGGTCCACCAGTCTCAGTCTGGGCTTCCAAGATAGCA 124469 Query 76451 TTCCAGACGACTCTAGCTTTTATTATAG-ATTTGTATCG--CTTCTCTCTTTCATATTGT 76507 | |||||| | ||| | | | | | || ||||||||| | || | Sbjct 124468 TACCAGACCTTTTGAGCGCGGACAGTCTCACGTCCA-CGACCTTCTCTCT--CGTAGCGG 124412 Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 || || | | || || || || || | |||||| | | |||||| || ||||| || Sbjct 124411 GTGTACAGCTCCTCGAACTCGTCACCGTACACATCAGCGAGACCAGGGCACTCATTGGGG 124352 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 ||||| | || ||| || | | | | || || ||||| || ||||| || ||||| Sbjct 124351 CACATGAGTGTCCATTCTGCGTTGGCTTCGACACGCTTCATGAACAGATCTGGGATCCAA 124292 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 ||||| | || ||||| || | | ||| || ||||| ||||| || || Sbjct 124291 AGAGCGAAGAACAGATCACGTGCACGCACTTCCTCCTTTCCGTGGTTCTTGCGGAGGTCC 124232 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGT 76747 | ||| || | ||| | |||||||| ||||| || || || | | || || || Sbjct 124231 ATGAAGGAGATGACATCTGCGTGCCATGGCTCTAGGTAGATGGCGAACGCGCCAGGACGC 124172 Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 || || || || || || | ||| | |||||||||||| || || | |||||| || || Sbjct 124171 TTGTTGCCACCTTGGTCGACATAGCGGGCAGTGTTATTGTAGACGCGCAACATCGGGATG 124112 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 | || || ||||| || ||||| || | ||| || |||| ||||| || || | Sbjct 124111 AGACCATTGGATGTGCCGTTTGTGCCTGCAATGTATGATCCAGTAGCACGGATCTT-GTG 124053 Query 76868 ATAGAT-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 || | ||||| || || || || | || ||||| | || || |||| |||||| Sbjct 124052 GCAGTTCAGGCCAATACCACCAGCATTCTTCGAGATCATGGCGCAAGTCTTCAGTGTGTC 123993 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 ||||| ||||| || || |||||| |||||| | | || || || || || Sbjct 123992 GTAGATACCCTCAATGCTGTCATCCTTCATGTCGATCAAGAAGCATGAAGCCAACTGTGC 123933 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT-TTCAGAAA 77045 || || || || | |||| |||||| || || || ||||| |||| ||| | Sbjct 123932 ATTCGGCGTACCAGCGCTGAACAGTGTAGGCGAAGCGTGTGTGAAGTATTTGTTCGACAT 123873 Query 77046 GTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACAC 77105 |||| ||||| || ||||| | || || ||||| || ||||| ||||| |||| Sbjct 123872 GTAG-TTGTAGGTCTCAATGGCGGCCTCGATATCGTCGCCGTGGATTCCAACAGCCACAC 123814 Query 77106 GCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATT 77165 |||| | ||| ||||| |||| || || || || || | ||||||||| Sbjct 123813 GCATGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCATCAATGCGGAGCAAGTATGAGC 123754 Query 77166 TTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || || |||||||| || | ||| ||||| ||||| || || | ||| Sbjct 123753 GTTCCAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCTCTGTCATAGACAAT 123699 >seq680 Length=821847 Score = 118 bits (130), Expect = 2e-21 Identities = 337/515 (65%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || ||||| |||| ||| || |||||||| || | ||| || || | |||| Sbjct 340820 TCGTTGGAGAAGGTGAGGCCAGCCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCG 340761 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || || || || ||||| || || || ||||| || || |||| | || | || || Sbjct 340760 AATGAGCCGGAGAAGAAGATACCCTCGACAGCAGCAAAGGCGATCAATCGCATAGCGAAA 340701 Query 46792 CTGGCATCATTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | || || | || ||||| | | ||||| ||||||||| | | |||||| Sbjct 340700 GTAGAGTCCTTGTCCGAGATCCATCGCAGTGCCCAGTCAGCCTTTCTGCGGATACAAGGG 340641 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || | || || || || ||||| | || | | || | | ||||| || Sbjct 340640 ATGTTGTCGATGGCGTTGAAGAGGTATGTTCGCTGCTTGGGCTCGCTGATGTATGTGTCG 340581 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | || || | || || || ||||| || || ||||| || ||||| || Sbjct 340580 ATGAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 340521 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028 |||| ||| || | || || ||||| | | ||||| || || ||||| || || Sbjct 340520 CATCGTGCCTCCGGTATTTGCACCTCGGCGCTGAATCGCTCGACCAGGTTCTCGTTGACA 340461 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088 || || || || || || ||||| | || ||| || || | || ||| | Sbjct 340460 ATGCCGTCGGATGCGGCGAAGAATGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCA 340401 Query 47089 GTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAG 47145 | ||| || |||||||| | || ||| || || | ||| | ||||| || |||||| Sbjct 340400 TTGAGTCGCTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCAGTCCAG 340341 Query 47146 AATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||||| ||||| || || || ||||| |||||||| Sbjct 340340 AATGATGCCTCGGCCTTCTTGTACATGTTCCATAT 340306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917066782400