Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq455 114 3e-20 seq530 98.7 2e-15 seq671 89.7 1e-12 seq653 84.2 5e-11 >seq455 Length=1194790 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || |||||||||||||| || | | ||| | || ||||| | Sbjct 1130781 CAAG-TGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCTTCGA 1130839 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | | ||||||||||| | ||| || ||||| ||||| | Sbjct 1130840 GTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGA 1130899 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | |||| ||| || |||||||| || || |||| Sbjct 1130900 TCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGC 1130959 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| |||||| Sbjct 1130960 CGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| || | || || | ||||| || | || || ||||| Sbjct 1130568 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1130627 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||||||||||| | ||| || ||||| ||||| || || || || | Sbjct 1130628 GATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTT 1130687 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| || ||||| || | ||||| || ||||| ||||| ||||| || Sbjct 1130688 GTCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGAC 1130747 Query 152093 GAAGACCTGCAT 152104 ||||| ||||| Sbjct 1130748 GAAGATTTGCAT 1130759 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| || || ||||| || |||||||||||||||| | || | Sbjct 1130997 GAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACG 1131056 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || ||||| || || | ||||||||||| | || || || Sbjct 1131057 GCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTC 1131116 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | |||| | ||| || || || || Sbjct 1131117 CTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGT 1131176 Query 152066 AATAGTTTTGCCCGT 152080 ||||| ||||| || Sbjct 1131177 GATAGTCTTGCCGGT 1131191 >seq530 Length=291 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| || | || || | ||||| || | || || ||||| Sbjct 74 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 133 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||||||||||| | ||| || ||||| ||||| || || |||||| | Sbjct 134 GATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 193 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | |||| ||| || |||||||| || || ||||| ||||| ||||| || Sbjct 194 GTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 253 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 254 GAAGATCTGCAT 265 >seq671 Length=186828 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 || ||||||||||| |||| | ||| | ||||| || | ||||| || ||||||| Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTT--CCAGCGAAGA 53928 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | ||||||||||| | || || ||||| || || || || |||||| | | Sbjct 53927 TCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 53868 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | | || || ||| || ||||| || ||||| ||||| ||||| ||||| |||| Sbjct 53867 CGATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 53808 Query 152095 AG 152096 || Sbjct 53807 AG 53806 >seq653 Length=579839 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||||| || ||||||||||| ||| | ||| | ||||| Sbjct 344596 GAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATC 344655 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | ||||||||||| | |||||| ||||| || Sbjct 344656 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 344715 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA 152047 ||||| || |||||| | || | | |||| || Sbjct 344716 CTGAATCTTGCTCTTGACATTGTCGATGGTGTCGGA 344751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153792046425095