Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq455 114 3e-20
seq530 98.7 2e-15
seq671 89.7 1e-12
seq653 84.2 5e-11
>seq455
Length=1194790
Score = 114 bits (126), Expect = 3e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| || || |||||||||||||| || | | ||| | || ||||| |
Sbjct 1130781 CAAG-TGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCTTCGA 1130839
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| | | ||||||||||| | ||| || ||||| ||||| |
Sbjct 1130840 GTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGA 1130899
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | |||| ||| || |||||||| || || ||||
Sbjct 1130900 TCTTGGACTTGACATTGTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGC 1130959
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||| ||||||| ||||||
Sbjct 1130960 CGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972
||| || ||||||||||| || | || || | ||||| || | || || |||||
Sbjct 1130568 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1130627
Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032
||| || | ||||||||||| | ||| || ||||| ||||| || || || || |
Sbjct 1130628 GATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTGCTCTTCACGTT 1130687
Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092
|| | | |||| || ||||| || | ||||| || ||||| ||||| ||||| ||
Sbjct 1130688 GTCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGAC 1130747
Query 152093 GAAGACCTGCAT 152104
||||| |||||
Sbjct 1130748 GAAGATTTGCAT 1130759
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| ||||| || || ||||| || |||||||||||||||| | || |
Sbjct 1130997 GAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACG 1131056
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || || ||||| || || | ||||||||||| | || || ||
Sbjct 1131057 GCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTC 1131116
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || ||||| | || | | |||| | ||| || || || ||
Sbjct 1131117 CTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGT 1131176
Query 152066 AATAGTTTTGCCCGT 152080
||||| ||||| ||
Sbjct 1131177 GATAGTCTTGCCGGT 1131191
>seq530
Length=291
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972
||| || ||||||||||| || | || || | ||||| || | || || |||||
Sbjct 74 CTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 133
Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032
||| || | ||||||||||| | ||| || ||||| ||||| || || |||||| |
Sbjct 134 GATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 193
Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092
|| | |||| ||| || |||||||| || || ||||| ||||| ||||| ||
Sbjct 194 GTCGATAGTGTCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 253
Query 152093 GAAGACCTGCAT 152104
||||| ||||||
Sbjct 254 GAAGATCTGCAT 265
>seq671
Length=186828
Score = 89.7 bits (98), Expect = 1e-12
Identities = 130/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974
|| ||||||||||| |||| | ||| | ||||| || | ||||| || |||||||
Sbjct 53985 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTT--CCAGCGAAGA 53928
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| | | ||||||||||| | || || ||||| || || || || |||||| | |
Sbjct 53927 TCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 53868
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | | | || || ||| || ||||| || ||||| ||||| ||||| ||||| ||||
Sbjct 53867 CGATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 53808
Query 152095 AG 152096
||
Sbjct 53807 AG 53806
>seq653
Length=579839
Score = 84.2 bits (92), Expect = 5e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | || || || ||||| || ||||||||||| ||| | ||| | |||||
Sbjct 344596 GAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATC 344655
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| | | ||||||||||| | |||||| ||||| ||
Sbjct 344656 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 344715
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA 152047
||||| || |||||| | || | | |||| ||
Sbjct 344716 CTGAATCTTGCTCTTGACATTGTCGATGGTGTCGGA 344751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153792046425095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |