Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq455 154 1e-32
seq530 122 6e-23
seq671 104 2e-17
seq653 86.0 5e-12
>seq455
Length=1194790
Score = 154 bits (170), Expect = 1e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||| ||| || ||||||||||| ||||||||||| || | ||| ||| | ||
Sbjct 1130547 CAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATC 1130606
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||| |||||| || || ||||||| |||||||| || | || | ||| ||||| ||
Sbjct 1130607 CTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTC 1130666
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
||||| ||||| | | |||||||| | ||||| ||||||| |||||||||
Sbjct 1130667 TTGGATCTTGCTCTTCACGTTGTCGATGGTGTCCGATGATTCTACCTCCAACGTAATCGT 1130726
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || ||||| ||||| ||||||||||||||
Sbjct 1130727 CTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
Score = 118 bits (130), Expect = 8e-22
Identities = 169/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| || | | ||||| ||| || || |||||||||||||||||
Sbjct 1130754 TTGCATACCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTA 1130813
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | ||| ||| |||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct 1130814 GTCCGAGAGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTC 1130873
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
| || | || ||||| || ||||| ||| || ||| | || ||||||
Sbjct 1130874 CGGTGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGT--CGATAGTGTCGCTC 1130931
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| | || || ||||| || ||||||||||| |||||||| |||||
Sbjct 1130932 GACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 86.0 bits (94), Expect = 5e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| |||||| |||||||||||||||| || || |||| ||
Sbjct 1131007 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCGTCCTCG 1131066
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || || || || | ||||||||| || | ||| | || ||||| |||
Sbjct 1131067 AGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 1131126
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||| | | | ||||||||| || |||||||| | || || |||||
Sbjct 1131127 ATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTG 1131186
Query 44309 CCCGT 44313
|| ||
Sbjct 1131187 CCGGT 1131191
>seq530
Length=291
Score = 122 bits (134), Expect = 6e-23
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||| ||| || ||||||||||| ||||||||||| || | ||| ||| | ||
Sbjct 53 CAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGATAGTGTGCGACCATC 112
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||| |||||| || || ||||||| |||||||| || | || | || ||||| ||
Sbjct 113 CTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 172
Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302
||||| ||| || ||| | || |||||| || || ||||| | || ||
Sbjct 173 TTGGATCTTGGACTTGACATTGT--CGATAGTGTCGCTCGACTCGACCTCAAGAGTGATG 230
Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || ||||||||||| |||||||| |||||
Sbjct 231 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
>seq671
Length=186828
Score = 104 bits (114), Expect = 2e-17
Identities = 138/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 44142 TGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGG 44201
||| | |||| ||||||||||| |||| || ||| | || |||| ||||| || |
Sbjct 53993 TGCGCACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAG 53934
Query 44202 CAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT-- 44259
| ||||||||||||||||| || | || | || ||||| ||| ||||| |||
Sbjct 53933 CGAAGATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA 53874
Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319
|| ||| | ||||| || | || |||||||| | || || ||||| || ||||||||
Sbjct 53873 CATTGT--CGATGGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGT 53816
Query 44320 CTTCACGAAG 44329
||| ||||||
Sbjct 53815 CTTGACGAAG 53806
>seq653
Length=579839
Score = 86.0 bits (94), Expect = 5e-12
Identities = 112/153 (73%), Gaps = 4/153 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || ||| |||||| ||||||||||| ||| ||| ||| | || ||
Sbjct 344600 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCG 344659
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| |||||||| |||||||| || | || | || ||||| |||
Sbjct 344660 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGA 344719
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279
||||| ||| || ||| | ||||||||||
Sbjct 344720 ATCTTGCTCTTGACATTGT--CGATGGTGTCGG 344750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359981866540065
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |