Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq455 132 1e-25
seq671 120 7e-22
seq653 120 7e-22
seq530 107 5e-18
>seq455
Length=1194790
Score = 132 bits (146), Expect = 1e-25
Identities = 143/188 (76%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCAAA 178001
|| || || || ||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGC---GACACCATCGACAACGTCAAG 1131135
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
|||||||||||||| || || || |||||||||||||| || || || ||||| ||
Sbjct 1131134 TCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGC 1131075
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121
|| || ||||| || || | || || ||||||| ||| |||| || || || || ||
Sbjct 1131074 AAGCAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTC 1131015
Query 178122 CATCTTGT 178129
||||| ||
Sbjct 1131014 CATCTCGT 1131007
Score = 127 bits (140), Expect = 5e-24
Identities = 152/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || |||||||| || ||||| || | ||||| ||| || |||
Sbjct 1130756 CAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCGGAC 1130697
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| || ||||| || || ||||| |||||||||||
Sbjct 1130696 ACCATCGACAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAGCAG 1130637
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||| | || ||||| | || || | || || ||| ||
Sbjct 1130636 CGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAACATC 1130577
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || |||||||| ||||
Sbjct 1130576 CAGAAGGAGAGCACACTGCA-CTTG 1130553
Score = 125 bits (138), Expect = 2e-23
Identities = 154/208 (74%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || ||||| || || ||||| || || || ||||| || ||||| || |||
Sbjct 1130984 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC--- 1130928
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| ||||| || ||||| ||||| || ||||| || || ||||| |||||||||
Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || | ||||||||||| || || |||||||| || | ||||| | || || |||
Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
||||||| ||||| || || || ||||
Sbjct 1130807 ATCCAAAAGGAATCGACTCTCCA-CTTG 1130781
>seq671
Length=186828
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || ||||| || || || |||||||| |||||||| || || ||||||
Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||||||| || || || || ||||||||||| || |
Sbjct 53867 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTG 53926
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| ||||| || | || ||||| | ||||| |||| || ||| |||| ||
Sbjct 53927 ATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 53985
>seq653
Length=579839
Score = 120 bits (132), Expect = 7e-22
Identities = 118/151 (78%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037
|| ||||||||||| || ||||| |||||||||||||| || |||||||| ||||||
Sbjct 344751 TCCGACACCATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGAATCCCACCGGAC 344692
Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097
||||| || | ||||||||||| || |||||||| ||||| | ||||| ||| ||
Sbjct 344691 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTAC 344632
Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||| |||| || || || || || || ||||
Sbjct 344631 AACATCCAGAAGGAGTCCACCCTCCA-CTTG 344602
>seq530
Length=291
Score = 107 bits (118), Expect = 5e-18
Identities = 150/208 (72%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || ||||| || || ||||| || || || ||||| || ||||| || |||
Sbjct 262 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC--- 206
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| ||||| || ||||| ||||| || ||||| || || ||||| |||||||||
Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || || |||||||| || || ||| | || ||||| | || || | || || |||
Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
|||| || || |||||||| ||||
Sbjct 85 ATCCAGAAGGAGAGCACACTGCA-CTTG 59
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203701202642330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |