Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq455 132 1e-25 seq671 120 7e-22 seq653 120 7e-22 seq530 107 5e-18 >seq455 Length=1194790 Score = 132 bits (146), Expect = 1e-25 Identities = 143/188 (76%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || ||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 1131191 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCTAGC---GACACCATCGACAACGTCAAG 1131135 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||||||||| || || || |||||||||||||| || || || ||||| || Sbjct 1131134 TCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGC 1131075 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || || ||||| || || | || || ||||||| ||| |||| || || || || || Sbjct 1131074 AAGCAACTCGAGGACGGCCGTACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTC 1131015 Query 178122 CATCTTGT 178129 ||||| || Sbjct 1131014 CATCTCGT 1131007 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| || ||||| || | ||||| ||| || ||| Sbjct 1130756 CAAATCTTCGTCAAGACACTCACAGGCAAGACGATTACGTTGGAGGTAGAATCATCGGAC 1130697 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || ||||| || || ||||| ||||||||||| Sbjct 1130696 ACCATCGACAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAGCAG 1130637 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || ||||| | || || | || || ||| || Sbjct 1130636 CGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAACATC 1130577 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || |||||||| |||| Sbjct 1130576 CAGAAGGAGAGCACACTGCA-CTTG 1130553 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || || ||||| || ||||| || ||| Sbjct 1130984 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC--- 1130928 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| || ||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 1130927 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 1130868 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | ||||||||||| || || |||||||| || | ||||| | || || ||| Sbjct 1130867 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCTCGGACTACAAC 1130808 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| ||||| || || || |||| Sbjct 1130807 ATCCAAAAGGAATCGACTCTCCA-CTTG 1130781 >seq671 Length=186828 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||| |||||||| || || |||||| Sbjct 53807 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACCATC 53866 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || || || ||||||||||| || | Sbjct 53867 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTG 53926 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| ||||| || | || ||||| | ||||| |||| || ||| |||| || Sbjct 53927 ATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 53985 >seq653 Length=579839 Score = 120 bits (132), Expect = 7e-22 Identities = 118/151 (78%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||||||||||| || ||||| |||||||||||||| || |||||||| |||||| Sbjct 344751 TCCGACACCATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGAATCCCACCGGAC 344692 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| || | ||||||||||| || |||||||| ||||| | ||||| ||| || Sbjct 344691 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTAC 344632 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||| |||| || || || || || || |||| Sbjct 344631 AACATCCAGAAGGAGTCCACCCTCCA-CTTG 344602 >seq530 Length=291 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || || ||||| || ||||| || ||| Sbjct 262 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC--- 206 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| || ||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 205 GACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 146 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || ||| | || ||||| | || || | || || ||| Sbjct 145 CAGCGCCTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACACTATCAGACTACAAC 86 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || |||||||| |||| Sbjct 85 ATCCAGAAGGAGAGCACACTGCA-CTTG 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701202642330