Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201 7-07-13] 1,945 sequences; 34,940,764 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq530 159 3e-34 seq455 150 2e-31 seq653 104 2e-17 seq671 102 8e-17 >seq530 Length=291 Score = 159 bits (176), Expect = 3e-34 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 98 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||| ||||| ||||||||||| ||||||| || Sbjct 99 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 158 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | || | ||||||||||||||| | Sbjct 159 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCG--ATAGTGTCGCTCGACTCGA 216 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 217 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265 >seq455 Length=1194790 Score = 150 bits (166), Expect = 2e-31 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | ||||| || || || ||||| || ||||| ||||| ||| Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| |||||||||||||| |||| |||||| ||||||| || Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | || | ||||||||||||||| | Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCG--ATAGTGTCGCTCGACTCGA 1130938 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 1130939 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 1130592 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||| ||||| ||||||||||| ||||||| || Sbjct 1130593 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 1130652 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || |||| ||| | | | ||||| || || || Sbjct 1130653 ATACCCTCCTTGTCTTGGATCTTGCTCTTC-ACGTTGTCGATGGTGTCCGATGATTCTAC 1130711 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| ||||| || || || || ||||| ||||| || ||||| Sbjct 1130712 CTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||| || ||||| Sbjct 1130989 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 1131048 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| |||||||| ||||| || || ||||| ||||||| ||| Sbjct 1131049 AGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1131108 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | |||||||| |||||||| Sbjct 1131109 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCAC 1131167 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || || |||| Sbjct 1131168 CTCGAGGGTGATAGTCTTGCCGGTCA 1131193 >seq653 Length=579839 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| |||||| | Sbjct 344582 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 344641 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||||||||| |||| |||||| ||||||| || Sbjct 344642 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 344701 Query 41756 ACGCTCTCCTTGTCC 41770 | | |||||||||| Sbjct 344702 ATTCCCTCCTTGTCC 344716 >seq671 Length=186828 Score = 102 bits (112), Expect = 8e-17 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 ||| | ||||||| ||||| |||||||| || ||||| | || || | ||||| || | Sbjct 53993 TGCGCACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAG 53934 Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784 |||| |||| ||||| ||||||| ||||| || |||||||||| ||| || ||| Sbjct 53933 CGAAGATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA 53874 Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 || | ||| || || |||||||||||| | || || || || || || || || Sbjct 53873 CATTGTCGATG--GTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGT 53816 Query 41845 CTTTACGAA 41853 ||| ||||| Sbjct 53815 CTTGACGAA 53807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292760234000