Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cercospora_20cf._20sigesbeckiae_20[genbank_20GCA_5F002217505.1_20201
7-07-13] 1,945 sequences; 34,940,764 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq530 159 3e-34
seq455 150 2e-31
seq653 104 2e-17
seq671 102 8e-17
>seq530
Length=291
Score = 159 bits (176), Expect = 3e-34
Identities = 174/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||||| |||||||||||||| ||||| ||||| ||
Sbjct 39 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 98
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || | ||||||||| ||||| ||||||||||| ||||||| ||
Sbjct 99 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 158
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| || ||| || | || | ||||||||||||||| |
Sbjct 159 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCG--ATAGTGTCGCTCGACTCGA 216
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 217 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 265
>seq455
Length=1194790
Score = 150 bits (166), Expect = 2e-31
Identities = 172/229 (75%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| | ||||| || || || ||||| || ||||| ||||| |||
Sbjct 1130761 CCACCTCGTAGACGAAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAG 1130820
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||| |||||||||||||| |||| |||||| ||||||| ||
Sbjct 1130821 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 1130880
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| || ||| || | || | ||||||||||||||| |
Sbjct 1130881 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCG--ATAGTGTCGCTCGACTCGA 1130938
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 1130939 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1130987
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||||| |||||||||||||| ||||| ||||| ||
Sbjct 1130533 CCTCCACGAAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCTGAT 1130592
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || | ||||||||| ||||| ||||||||||| ||||||| ||
Sbjct 1130593 AGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 1130652
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || |||| ||| | | | ||||| || || ||
Sbjct 1130653 ATACCCTCCTTGTCTTGGATCTTGCTCTTC-ACGTTGTCGATGGTGTCCGATGATTCTAC 1130711
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| ||| ||||| || || || || ||||| ||||| || |||||
Sbjct 1130712 CTCCAACGTAATCGTCTTGCCTGTGAGTGTCTTGACGAAGATTTGCAT 1130759
Score = 131 bits (144), Expect = 2e-25
Identities = 154/206 (75%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || ||| ||||||||| ||||| || |||||
Sbjct 1130989 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 1131048
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||| |||||||| ||||| || || ||||| ||||||| |||
Sbjct 1131049 AGGGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1131108
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || | | ||| | | | |||||||| ||||||||
Sbjct 1131109 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATGGTGTCGCTAGACTCCAC 1131167
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || || ||||
Sbjct 1131168 CTCGAGGGTGATAGTCTTGCCGGTCA 1131193
>seq653
Length=579839
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| || || ||| ||||||||| ||||| |||||| |
Sbjct 344582 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 344641
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || |||||||||||||||||||| |||| |||||| ||||||| ||
Sbjct 344642 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 344701
Query 41756 ACGCTCTCCTTGTCC 41770
| | ||||||||||
Sbjct 344702 ATTCCCTCCTTGTCC 344716
>seq671
Length=186828
Score = 102 bits (112), Expect = 8e-17
Identities = 137/189 (72%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726
||| | ||||||| ||||| |||||||| || ||||| | || || | ||||| || |
Sbjct 53993 TGCGCACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAATTGCTTTCCAG 53934
Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784
|||| |||| ||||| ||||||| ||||| || |||||||||| ||| || |||
Sbjct 53933 CGAAGATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA 53874
Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844
|| | ||| || || |||||||||||| | || || || || || || || ||
Sbjct 53873 CATTGTCGATG--GTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGT 53816
Query 41845 CTTTACGAA 41853
||| |||||
Sbjct 53815 CTTGACGAA 53807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462292760234000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |