Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20sojina_20[genbank_20GCA_5F002150695.1_202017-05-19] 144 sequences; 15,477,581 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq59 159 6e-34 >seq59 Length=213647 Score = 159 bits (176), Expect = 6e-34 Identities = 551/856 (64%), Gaps = 22/856 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||||||||| | ||| |||||| |||||||||||||||||| Sbjct 94666 ATATGGAACATGTACAAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATCTG 94607 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 | ||||| | ||| |||| || | | ||| ||||| ||| || ||| | Sbjct 94606 TCAAAGGATCTCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCATCTCA 94547 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || || || || || || |||||||| ||| |||| || Sbjct 94546 CACGTCCTTGCATTCTTCGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 94487 Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || |||| | ||| | || | | || |||||||| |||||||| || Sbjct 94486 TTCAGCGCCGAGGTGCAAATACCCGAAGCACGA-TGCTTCTACGGCTTCCAGATCATGAT 94428 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGA-CG 25768 || || | ||||| ||| || || || || || || ||||| | || | Sbjct 94427 GGAGAACATCCACTCCGAGACATACTCC---CTCCTCATCGACACATACATCAGCGAGCC 94371 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | | | | || ||||| |||||||| |||| || |||| || |||| Sbjct 94370 TAAGCAACGAACAT-ACCTGTTCAACGCCATCGACAACATCCCATGCATTCGCAGAAAGG 94312 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||| || |||||| | || | | ||||| | ||| ||| | | Sbjct 94311 CTGACTGGGCCCTGCGATGGATCTCGGACAAGGACTCGACGTTCGCTATGCGACTGATTG 94252 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 ||||||||||||| ||||| ||||| ||| ||| || || || ||||||||||| | | Sbjct 94251 CCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCATCCATCTTCTGGTTGA 94192 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || |||| | || || ||| ||||||||||||||| | | ||||||| Sbjct 94191 AGAAGCGTGGCCTCATGGCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGG 94132 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 | | |||| || || || |||||| | | | | ||| | |||| || | | Sbjct 94131 GCATGCACACTGACTTCGCTTGCCTGTTGTTCTC---TCACCTCAAGAACAAGCCCAC-C 94076 Query 26069 AAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 ||| | || | || ||||| ||||| || | || ||| | || || Sbjct 94075 AAGTCGGTGGTGCAAAGCATCATTGTGGAGGCCGTCGCCATTGAGCAAGAATTCTTGACC 94016 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| | |||||| |||| ||||||||| Sbjct 94015 GATGCCTTGCCTTGTGCGCTGCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAG 93956 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTA 26245 | || || |||| |||||| | || || | | |||||| |||| | | Sbjct 93955 TTCGTCGCTGACCGACTGCTGCTCGCTCTTGGCAACCAAAAGTTCTACA--ACGCCACCA 93898 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 93897 ACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGC 93838 Query 26306 GGGTCGGCGACTATCA 26321 | || |||||||| || Sbjct 93837 GTGTTGGCGACTACCA 93822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843128079360