Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20sojina_20[genbank_20GCA_5F002150695.1_202017-05-19] 144 sequences; 15,477,581 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq140 143 4e-29 seq63 111 2e-19 >seq140 Length=104107 Score = 143 bits (158), Expect = 4e-29 Identities = 229/327 (70%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || | ||| |||| || | ||||| | || ||||| ||| Sbjct 21251 AAGATGAAGGAGACCGCTGAGGCATTCTTGGGCAAGAACGTGAAGAACGCTGTTGTCACT 21310 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || |||||||||| ||| || || ||||| ||||||||||| | | || | Sbjct 21311 GTTCCAGCTTACTTCAATGACCAGCAGCGCCAGGCCACAAAGGACGCCGGTCAGATCTCT 21370 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| | | | | | ||||| || || || || ||||| |||| || |||||| Sbjct 21371 GGTCTTACCGTGCACCGTGTGATCAACGAGCCTACTGCTGCTGCGCTTGCCTACGGTCTG 21430 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||| || ||| ||| | ||| ||| ||||| ||||||||||| || Sbjct 21431 GAGAAGGAC---GAC-AAGGT-----TGTCGCAGTCTACGATCTTGGTGGTGGTACTTTC 21481 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||| |||| | ||| | || ||| | |||||||| |||||||| ||||| Sbjct 21482 GATATCTCCATCCTCGAGATCTCCAACGGTGTCTTCGAAGTCAAGGCTACCAACGGTGAC 21541 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGAT 195988 |||||| | |||||||||||||||||| Sbjct 21542 ACTCATTTGGGTGGTGAAGATTTCGAT 21568 >seq63 Length=167957 Score = 111 bits (122), Expect = 2e-19 Identities = 243/362 (67%), Gaps = 13/362 (4%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 || || |||||||| || ||| | | ||||||||||| || ||||| | | || Sbjct 160216 CCTGAGGAAATTTCCTCCATGATCCTCGGAAAGATGAAGGAAGTCGCTGAATCGTACCTG 160157 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || | ||||| | | |||||||| ||||| || |||||||||| || | || || Sbjct 160156 GGCGAGACTGTTACCAACGCAGTTGTCACTGTGCCAGCTTACTTCAACGACGCCCAGCGT 160097 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 || || ||||| || | | | || || ||||| || ||| | | ||||||| Sbjct 160096 GCCGCAACCAAGGATGCGGGTACCATCGCTGGTCTCAATGTTCTCCGTGTGGTCAATGAG 160037 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGA---ACAAGGA-CG-AAGATAAAA 195866 || || || || || | || || ||||| ||||||| ||||||| || |||| | Sbjct 160036 CCCACGGCCGCCGCCCTCGCCTACGGTCTTGACAAGACCGACAAGGAGCGCCAGATCA-- 159979 Query 195867 ATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAG 195926 | ||| ||||| ||||| ||||| || ||||| || || | | | | || Sbjct 159978 ------TCGTCTACGATCTTGGTGGAGGTACATTCGATGTGTCCATTTTGACTGTCGACC 159925 Query 195927 GTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCG 195986 || | ||||| || | || ||||| |||||||| ||||| || || || ||||||| Sbjct 159924 AGGGCGTGTTCGAGGTGCAAGCAACTGCCGGTGATACCCATCTTGGAGGCGAGGATTTCG 159865 Query 195987 AT 195988 || Sbjct 159864 AT 159863 Score = 93.3 bits (102), Expect = 6e-14 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGT-ATGGCAAAATG--- 195353 || ||| ||||||||| | ||||| || ||||| ||||| ||| | ||| || | Sbjct 160601 AGTTATCGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCATG---AAGGGCGG 160545 Query 195354 -ATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCC 195412 | |||| |||||| | || |||||||||||||| | ||| ||||| | || || Sbjct 160544 CAACGTG--GAGATTCTTGTCAACGACCAAGGAAACCGAATAACGCCATCCTGGGTGGCA 160487 Query 195413 TTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCT 195472 | | || | || ||||| ||||||||||||||||| || ||| || |||||| Sbjct 160486 TGGAACGACGACGAGCGTCTTGTTGGAGATGCCGCAAAGAACCAGTTTGCCTCGAACCCA 160427 Query 195473 ATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTC 195532 | || ||||| || || ||||| ||||| ||||||| ||| ||| | || Sbjct 160426 CACCGAACAGTCTTCGATATCAAACGTCTCATTGGCCGCAAGTACGAGGAGAAGGATGTA 160367 Query 195533 CAAGACGATATAAAGGACT 195551 || | ||||| ||| ||| Sbjct 160366 CAGAAGGATATCAAGCACT 160348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861215847680