Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20sojina_20[genbank_20GCA_5F002150695.1_202017-05-19] 144 sequences; 15,477,581 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq59 179 5e-39 seq135 107 3e-17 >seq59 Length=213647 Score = 179 bits (198), Expect = 5e-39 Identities = 376/547 (69%), Gaps = 25/547 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || ||||||||||| || || ||||| ||||| ||| | || | Sbjct 94667 GATATGGAACATGTAC-AAGAAGGCCGAGGCATCATTCTGGACTGCCGAAGAGATTGATC 94609 Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCA 1455888 | | | | | ||||| ||| || | | |||||||||||| |||| Sbjct 94608 T-GTCAAAGGATC--TCCACGACTGGAACAAGCGACTCAATGACGACGAGCGCTTCTTCA 94552 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||||||| || || || |||||| ||| ||||| || ||||||||||| | Sbjct 94551 TCTCACACGTCCTTGCATTCTT-CGCCGCATCCGACGGCATTGTCAACGAGAACCTGGTC 94493 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | ||||| ||| | || || ||||| | || ||||| ||||||||| Sbjct 94492 GAGCGATTCAGCGCCGAGGTGCAAATACCCGAAGCACGATGCTTCTACGGCTTCCAGATC 94433 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || || ||||| ||||| |||||||| ||| ||| || Sbjct 94432 ATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGACACATACATCAGCGAG 94373 Query 1456069 CCGGTCGAGAAGGACC--ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | || || | |||| || ||||||||||| | || | | | | || Sbjct 94372 CC--TAAGCAACGAACATACCTGTTCAACGCCATCGACAACATCCCATGCATTCGCAGAA 94315 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 |||| |||||||| || |||||| ||||||| |||||| || || ||| Sbjct 94314 AGGCTGACTGGGCCCTGCGATGGATCTCGGACAAGGA----CTCGAC-GTTCGCTATGCG 94260 Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 || | | |||||| || |||||||| ||||| ||||| ||| ||| ||||||| Sbjct 94259 ACTGATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCCGGCTCATTCGCATCCATCTT 94200 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTC 1456302 ||| | |||||||| ||||||||| | || | || ||| |||||| | ||| | Sbjct 94199 CTGGTTGAAGAAGCGTGGCCTCATGGCTGG-CCTCACCTTCTCCAACGAGCTCATCTCCC 94141 Query 1456303 GCGACGA 1456309 ||||||| Sbjct 94140 GCGACGA 94134 Score = 118 bits (130), Expect = 2e-20 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| || |||||||||| || ||| |||| || | | ||| | |||| ||| Sbjct 94057 ATCATTGTGGAGGCCGTCGCCATTGAGCAAGAATTCTTGACCGATGCCTTGCCTTGTGCG 93998 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||||| | ||||||||||||||||||||| || ||||| ||||| | Sbjct 93997 CTGCTCGGCATGAACGCTAA-GCTCATGTGCCAGTACATTGAGTTC-GTCGCTGACCGAC 93940 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| || || ||| | | ||| |||| | ||||||| ||| | ||| Sbjct 93939 TGCTGCTCGCTCTTGGCAACCAA-AAGTTCTACAACGCCACCAACCCCTTCGACTTCATG 93881 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| || | |||||| ||| Sbjct 93880 GAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAG 93821 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 93820 AAGGCTGGTGTCA 93808 >seq135 Length=121428 Score = 107 bits (118), Expect = 3e-17 Identities = 171/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 724900 ACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCT 724959 || |||| ||| || || || ||||||||||| ||||| || | | ||| | Sbjct 66986 ACGCGTCTTTTTCCTCCA--GTCCTCAAGCAGGTCCACCCAGACACTGGT-----ATC-T 67037 Query 724960 CCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCA 725019 ||||| ||||||||||| | ||||| || || |||||||| |||| ||| ||| | Sbjct 67038 CCAACCGTGCCATGTCGATCCTCAACTCCTTCGTGAACGACATCTTCGAGCGCGTCGCAA 67097 Query 725020 CCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCC 725079 | |||||| || || || ||||||| |||||| | ||||| |||| Sbjct 67098 CTGAGGCCTCCAAGCTCGCTGCCTACAACAAGAAGTCAACGATCTCATCACGCGAAATCC 67157 Query 725080 AGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCA 725139 |||| ||||||| || ||| | | ||| || ||||||| ||||||||| || ||||||| Sbjct 67158 AGACTTCCGTGCGACTCATCCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCA 67217 Query 725140 CCA 725142 ||| Sbjct 67218 CCA 67220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177797310935328