Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercospora_20sojina_20[genbank_20GCA_5F002150695.1_202017-05-19] 144 sequences; 15,477,581 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq132 82.4 7e-11 >seq132 Length=72508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 34325 GTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCAT 34382 ||| | |||||||| | |||| || |||| | ||| |||| |||| ||| || Sbjct 51483 GTGCACATCTGGGATGGCAACGGATCCAGAGAGTATCTCGACAGCGTCGGGCTTTCTCAC 51542 Query 34383 CTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGG 34442 | || | || || ||| | || || |||||||||||||| |||||||| ||||| || | Sbjct 51543 CGCG--AAGAAGGTGACCTTGGGCCAGTCTACGGGTTCCAATGGAGACATTTTGGTGCCG 51600 Query 34443 AGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGA 34502 |||| || || | | |||||| | || || |||| ||| || || | || | Sbjct 51601 AGTACAAGGACTGCCATACAGACTATACTGGGCAAGGAGTGGATCAATTGGCTGAGGTCA 51660 Query 34503 TCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 || ||| | ||| || ||| |||| ||| | ||| | |||| || |||||||| Sbjct 51661 TCCACAAACTCAAGAACAATCCTTATGATAGACGAATCATCATGTCTGCCTGGAACCC 51718 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 |||||||| || |||| | ||| | ||| |||| ||| || ||| | ||| ||| Sbjct 51718 GGGTTCCAGGCAGACATGATGATTCGTCTATCATAAGGATTGTTCTTGAGTTTGTGGATG 51659 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 || | || || ||| |||| || || | |||||| | | || || ||||| Sbjct 51658 ACCTCAGCCAATTGATCCACTCCTTGCCCAGTATAGTCTGTATGGCAGTCCTTGTACTCG 51599 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || ||||| |||||||| |||||||||||||| || || | ||| || || | || | | Sbjct 51598 GCACCAAAATGTCTCCATTGGAACCCGTAGACTGGCCCAAGGTCACCTTCTT--CGCGGT 51541 Query 6965 GGGAACCCCCG--CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 | ||| |||| |||| ||| | |||| || |||| | |||||||| | ||| Sbjct 51540 GAGAAAGCCCGACGCTGTCGAGATACTCTCTGGATCCGTTGCCATCCCAGATGTGCAC 51483 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 34661 GACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATC 34720 |||||||| |||||||||| |||||||| ||| ||||| ||| | || ||||| | Sbjct 51858 GACATGGGTCTAGGGGTGCCATTCAACATCGCTTCGTACGCACTGTTAACACACATGGTT 51917 Query 34721 GCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATC 34780 || | | | || ||||||||||| ||| |||||| |||| |||||||| || Sbjct 51918 GCGCGCGCCACGGATTTGGTTCCTGGCAGTCTGACGCATACAATGGGAGATGCGCACGTC 51977 Query 34781 TACCTGAACCACA 34793 || ||| |||||| Sbjct 51978 TATCTGGACCACA 51990 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACC 6611 |||||| ||| |||| |||||||| |||| |||||| ||| ||||||||||| Sbjct 51990 TGTGGTCCAGATAGACGTGCGCATCTCCCATTGTATGCGTCAGACTGCCAGGAACCAAAT 51931 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 || | | | || | ||||| || | ||| ||||| ||| |||||||| ||||||| Sbjct 51930 CCGTGGCGCGCGCAACCATGTGTGTTAACAGTGCGTACGAAGCGATGTTGAATGGCACCC 51871 Query 6672 CTAACCCCATGTC 6684 ||| |||||||| Sbjct 51870 CTAGACCCATGTC 51858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261593127680