Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1383 109 1e-18 >seq1383 Length=8527 Score = 109 bits (120), Expect = 1e-18 Identities = 563/876 (64%), Gaps = 33/876 (4%) Strand=Plus/Plus Query 229780 ATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTT--CCTC 229837 || ||| | |||||||||||||| | ||| ||||||||||| | ||||| || |||| Sbjct 6913 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGACCTC 6972 Query 229838 TGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGA-ACGTCATTTCATC 229896 | | | ||| || ||||||| | || |||| ||||| || | || | |||||| Sbjct 6973 TCCAAG--GACCTCCACGACTGGAACAACAAGATCAACGACGATGAGAAGT-ACTTCATC 7029 Query 229897 AAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCA-GAC 229955 |||||||| | ||| ||||| | || || || || || | || || ||| || Sbjct 7030 TCTCACATCCTCGCTTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTGGTCGAG 7089 Query 229956 CAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATT 230015 | ||| || | || || ||| || ||||| || || || | | ||| | | Sbjct 7090 CG-CTTCAGCGGCGAGGTCCAGGTCCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCAT 7148 Query 230016 CAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGA 230075 | || ||||| ||||| || | ||||| || ||| | || | | || Sbjct 7149 GATGGAGAACATCCACTCTGAGACCTACTCCCTGCTCATTGACACCTACAT---CAAGGA 7205 Query 230076 GCAAGAACGGA--ACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAA 230132 || | | | ||| | || || ||||||| || | |||||| || | | || || Sbjct 7206 GCCTGCCCAGCGCACGCACCTGTTCAATGCCATCGACACCATCCCCGCCATCCGCAAGAA 7265 Query 230133 GGCAAAGTGGGCTCAGAAATGGCTAGA--ACCTGGTAAATCG---TTTGCCGAGCGTCTC 230187 ||| | ||||| | | ||| | ||| | || ||| |||||| |||| || Sbjct 7266 GGCCGACTGGGCCCTGCGGTGGATCACTGACCAG--AAGTCGACCTTTGCCCAGCGCCTG 7323 Query 230188 GTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAGTTTCTGCG-CCATCTTTT 230245 ||||| | | ||| || ||||| || | ||| | || | | ||| ||||||| | Sbjct 7324 GTCGCGTTTGCTGCTGTCGAGGGTAT-CT-TCTTCAGCGGTGCCTTTGCCTCCATCTTCT 7381 Query 230246 GGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCG 230305 |||| ||| || | ||||| ||||| | || |||||| ||||| || | Sbjct 7382 GGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGTG 7441 Query 230306 ACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTA 230364 ||||||||||||| || | | |||| | || ||| || || || ||||| | Sbjct 7442 ACGAGGGTCTCCA-CACCGACTTCGCCTGCCTGCTGTTCTC---GCACCTTAACAACCGC 7497 Query 230365 CCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTC 230421 || | || ||||| | | ||||| || || || | ||| |||||||| Sbjct 7498 CCCAGCAAGCAGGTCATTGAGGACATCATCGTCGACGCCGTGCGCATCGAGCAGGAGTTC 7557 Query 230422 ATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTAC 230481 | || || | || || ||| | ||||||||| | | || ||| |||||| Sbjct 7558 CTCACCGAGGCCCTGCCGTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTAC 7617 Query 230482 ATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCT 230541 || || ||||| ||||||||| | | || || || || ||||||| |||||| || Sbjct 7618 ATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGCAACGAGAAGGTGTACCGGTCG 7677 Query 230542 AAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAA 230601 | |||||||| | || |||||| ||| || || || ||||||||||||||||| Sbjct 7678 ACAAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAG 7737 Query 230602 AAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| ||| | || || |||| | | || || ||| Sbjct 7738 AAGCGCGTCGGCGAGTACCAGAAGGCCGGCGTCATG 7773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057742191858680