Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1383 114 1e-20 >seq1383 Length=8527 Score = 114 bits (126), Expect = 1e-20 Identities = 372/570 (65%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| ||| || ||||| ||| || | |||||||| | ||| || ||||| || Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| |||||||| || || ||||| | ||| || || | ||| || | || Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 ||||| ||||||||||| | |||||||||| | || | ||| | |||| | Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGCGACCAGGCGCTGGGCAAAGGTCGACTTC 7299 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTATGCAATCCATCGTTTC 17193 | || | ||||| | | |||| ||||| || |||| ||| || || || Sbjct 7298 TGGTCAGTGATCCACCGCAGGGCCCAGTCGGCCTTCTTGCGG-ATGGCGGGGATGGTGTC 7240 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGT--AGG-TCGATTATATACGTATCGATGAG 17250 ||||| || || | | | | ||| ||| || | || || || || ||||| Sbjct 7239 GATGGCATTGAACAGGTGCG---TGCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAG 7183 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 ||| ||| | || ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 7182 CAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCG 7123 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 || |||| | || || || || ||| || || | || || ||||| |||||||| Sbjct 7122 AGCCTCCGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCC 7063 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTG-T 17427 ||| ||||||||| || || | || || ||||| || || || || || || | Sbjct 7062 GTCCGACGCGGCGAAGAAAGCGAGGATGTGAGAGATGAAGTACTTCTCATCGTCGTTGAT 7003 Query 17428 AAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACT 17487 | |||||| | | || ||||| | || | || |||| |||||| ||| Sbjct 7002 CTTGTTGTTCCAGTCGTGGAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAAGA 6943 Query 17488 AGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||| | ||||| || ||||| | ||| || Sbjct 6942 AGCCTCGGCCTTCTTGTACATCTGCCAGAT 6913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517506551184480