Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq979 140 4e-28
seq1383 86.0 7e-12
>seq979
Length=11123
Score = 140 bits (154), Expect = 4e-28
Identities = 443/682 (65%), Gaps = 10/682 (1%)
Strand=Plus/Minus
Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055
|| ||||||| | ||||||||||| | || || || ||||| ||||| || ||||||
Sbjct 4073 GGGCACATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATC 4014
Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115
|| || || | || ||||| | | | |||||| || || ||||| ||
Sbjct 4013 CAGAGGGCCAGGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGG 3954
Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175
||||||||| | | | || | ||||| || || | ||| |||| | | || ||
Sbjct 3953 TCGAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGA 3894
Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235
|| ||||| || || || || | ||| | |||||||| || | || | | ||| ||
Sbjct 3893 CGCTTGTTGCCACCTTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGG 3834
Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295
|| || |||||||| | || ||||| |||| ||| || |||| | ||||| ||
Sbjct 3833 ATGATGCCATTGGAAGTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGG 3774
Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 54354
|| || || || || |||||||| || || || | ||||| || |||| |
Sbjct 3773 TGGATGTTGAGGCCGATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACT 3715
Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414
|| ||||||||||| || || |||||| |||||| | || || || || | ||
Sbjct 3714 GTCGTAGATGCCCTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTG 3655
Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474
| || || || || || || | ||| || || || || || || | || | ||
Sbjct 3654 GGCCTGAGGGGTACCGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGA 3595
Query 54475 AAGTAGATTGTACGTCTCGATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTG 54530
| || ||||| |||||||| | || | | || || |||| || || |
Sbjct 3594 CATGAGGTTGTATGTCTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGG 3539
Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590
| |||||||| | ||||||||| || | || || |||||| ||| | ||||| | ||
Sbjct 3538 CAACACGCATGATCATGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGT 3479
Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650
| || |||| || || || ||||| || | ||| ||||| || || || | ||
Sbjct 3478 ATGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAA 3419
Query 54651 TAACTGAGTTGAGTTTATCCTT 54672
| | |||| ||| | |||||
Sbjct 3418 TGGCCGAGTCGAGCTCCTCCTT 3397
>seq1383
Length=8527
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| || || ||||| ||| ||| ||||||||||| | || | ||||||||
Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || || |||||||| ||||| ||||| || ||||| || ||||| ||||| | ||
Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277
||||| || || || || || ||||| ||
Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGC 7327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593676803705280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |