Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq979 140 4e-28 seq1383 86.0 7e-12 >seq979 Length=11123 Score = 140 bits (154), Expect = 4e-28 Identities = 443/682 (65%), Gaps = 10/682 (1%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||||| | ||||||||||| | || || || ||||| ||||| || |||||| Sbjct 4073 GGGCACATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATC 4014 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || | || ||||| | | | |||||| || || ||||| || Sbjct 4013 CAGAGGGCCAGGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGG 3954 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | | || | ||||| || || | ||| |||| | | || || Sbjct 3953 TCGAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGA 3894 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || || || || | ||| | |||||||| || | || | | ||| || Sbjct 3893 CGCTTGTTGCCACCTTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGG 3834 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 || || |||||||| | || ||||| |||| ||| || |||| | ||||| || Sbjct 3833 ATGATGCCATTGGAAGTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGG 3774 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 54354 || || || || || |||||||| || || || | ||||| || |||| | Sbjct 3773 TGGATGTTGAGGCCGATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACT 3715 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 || ||||||||||| || || |||||| |||||| | || || || || | || Sbjct 3714 GTCGTAGATGCCCTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTG 3655 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474 | || || || || || || | ||| || || || || || || | || | || Sbjct 3654 GGCCTGAGGGGTACCGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGA 3595 Query 54475 AAGTAGATTGTACGTCTCGATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTG 54530 | || ||||| |||||||| | || | | || || |||| || || | Sbjct 3594 CATGAGGTTGTATGTCTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGG 3539 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590 | |||||||| | ||||||||| || | || || |||||| ||| | ||||| | || Sbjct 3538 CAACACGCATGATCATGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGT 3479 Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 | || |||| || || || ||||| || | ||| ||||| || || || | || Sbjct 3478 ATGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAA 3419 Query 54651 TAACTGAGTTGAGTTTATCCTT 54672 | | |||| ||| | ||||| Sbjct 3418 TGGCCGAGTCGAGCTCCTCCTT 3397 >seq1383 Length=8527 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || || ||||| ||| ||| ||||||||||| | || | |||||||| Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || |||||||| ||||| ||||| || ||||| || ||||| ||||| | || Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| || || || || || ||||| || Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGC 7327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593676803705280