Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1383 378 7e-100 seq4893 131 2e-25 seq2403 129 6e-25 seq2035 120 3e-22 seq88 109 6e-19 >seq1383 Length=8527 Score = 378 bits (418), Expect = 7e-100 Identities = 531/737 (72%), Gaps = 15/737 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | ||||| Sbjct 6913 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGACCTC 6972 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | | || ||||| | ||| | |||||| Sbjct 6973 TCCAAGGACCTCCACGACTGGAACAACAAGATCAACGACGATGAGAAGTACTTCATCTCT 7032 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || || |||||||| |||||||||||||||||||| ||||||||||| Sbjct 7033 CACATCCTCGCTTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 7092 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| | ||||| || |||||||||||||| |||||| ||| Sbjct 7093 TTCAGCGGCGAGGTCCAGGTCCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 7152 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | || || ||||| ||||| ||| | | || || | Sbjct 7153 GAGAACATCCACTCTGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGC-CTGC 7211 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || | || || |||| || |||||||| || || || | || ||||||| Sbjct 7212 CCAGCGCACGCACC---TGTTCAATGCCATCGACACCATCCCCGCCATCCGCAAGAAGGC 7268 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047 ||| ||||| ||||| |||||| | | | ||| | || |||| | | |||||||||| | Sbjct 7269 CGACTGGGCCCTGCGGTGGATCACTGACC-AGAAGTCGACCTTTGCCCAGCGCCTGGTCG 7327 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | || || || |||||||| ||||||| || || ||| |||| || ||||||| Sbjct 7328 CGTTTGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 7387 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| ||||||||||||||||||||||| ||| ||||||||||||||| | ||||||| Sbjct 7388 AGAAGCGCGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGTGACGAGG 7447 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || |||||| ||||| |||||||| ||| | | || || ||| | Sbjct 7448 GTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCTTAACAACCGCCCCAGCAAGC 7507 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | | ||| ||| || |||||| || |||||||||| ||||||||||| | Sbjct 7508 AGGTCATTGAGGACATCATCGTCGACGCCGTGCGCATCGAGCAGGAGTTCCTCACCGAGG 7567 Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | ||||| ||||| ||||| || | || | | | |||| ||| ||||| |||||| Sbjct 7568 CCCTGCC-GTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTC 7626 Query 117347 GTCGCCGACAGGCTGCT 117363 ||||||||| | ||||| Sbjct 7627 GTCGCCGACCGCCTGCT 7643 >seq4893 Length=312 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || ||||| || || || | || || || | | Sbjct 88 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCA 147 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| |||||||| || ||||||| Sbjct 148 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 206 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||| ||| |||| |||| ||| || |||| ||||||||| Sbjct 207 GCAGCGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAA 266 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| |||| Sbjct 267 CATCCAGAAGGAGAGCACGTTGCA 290 >seq2403 Length=4098 Score = 129 bits (142), Expect = 6e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || |||||||| || ||||||||| |||| ||||| || | | Sbjct 2357 TGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGG 2298 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | | ||||| || || | ||||| |||||||| ||| | ||||||| Sbjct 2297 ACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGC 2238 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || |||| |||||||||||||| || || | ||||| ||| |||||||||| Sbjct 2237 AGCGCCTGATCTTTGCGGGCAAACAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACA 2178 Query 40871 TCCAGAAGG 40879 | ||||||| Sbjct 2177 TTCAGAAGG 2169 >seq2035 Length=5329 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | | | Sbjct 1248 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 1189 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 1188 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1129 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | | |||||| || ||||| Sbjct 1128 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCAGGACCCTCTCGGATTACAAT 1069 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| ||| || || || ||| | ||| || | || || ||| Sbjct 1068 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 1018 >seq88 Length=36327 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || || || | || || ||| | | Sbjct 33115 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATTACTCTGGAAGTGGAATCTTCG 33174 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| ||| |||| || || ||||| |||||| | ||||| Sbjct 33175 GATACGATCGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCA 33233 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||| |||| || | || || || ||||||||| Sbjct 33234 GCAGCGTTTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGGACTCTGTCCGACTACAA 33293 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| || || || | ||| |||| | | |||||| Sbjct 33294 CATCCAGAAGGAGAGTACTCTCCACTTGGTGCTGCGTCTCCGTGGCGGC 33342 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || || |||||| |||| || || | || Sbjct 32659 ATGCAAATCTTCGTCAAGACCCTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 32718 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| ||||| || || | ||||| Sbjct 32719 GACACCATCGACAACGTT-AAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCA 32777 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||||| || || || | ||||| || || ||||| Sbjct 32778 GCAGCGCCTGATTTTTGCGGGCAAACAACTCGAGGATGGTCGCACTCTTTCGGATTACAA 32837 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| ||| ||||| || || ||||| || | || || Sbjct 32838 TATCCAGAAGGAAAGCACTCTGCACCTTGTCCTGCGCCTGCGCGGTGG 32885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515180326711360