Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4893 138 1e-27 seq2035 131 2e-25 seq88 109 6e-19 seq2403 98.7 1e-15 seq5961 93.3 5e-14 >seq4893 Length=312 Score = 138 bits (152), Expect = 1e-27 Identities = 163/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 || |||||| ||||| ||||||||||| || || ||||| || ||||||||| |||| Sbjct 300 CAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTC 241 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || | |||||| || ||||| || || ||||||||||| | || | || ||||||||| Sbjct 240 CTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 181 Query 43091 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 43146 | ||| || |||| ||| | | | |||||| |||| ||||| || | ||| | Sbjct 180 CTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTC---TCCACCTCCAGCGTAA 125 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || |||||||| ||||||||||| Sbjct 124 TCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq2035 Length=5329 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || ||||||||||| | || |||| | || || |||||||| ||| Sbjct 1052 GTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCAAGCTGCTTGCCA 1111 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || ||||||||||| | || | || |||||||||| ||| || ||| Sbjct 1112 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1171 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||||||||| ||||| || | ||||| || |||||||| || ||| Sbjct 1172 ACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 1231 Query 43167 TTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 1232 TTCACGAAGATCTGCAT 1248 >seq88 Length=36327 Score = 109 bits (120), Expect = 6e-19 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| || | || |||||||| || || ||||| || | ||||||||| | Sbjct 33330 ACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACC 33271 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| || ||||| || | ||||||||||| | || | | |||||| Sbjct 33270 ATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTT 33211 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||| ||| | |||| |||| ||| | | | ||| || |||||||| || | || Sbjct 33210 ATCC-TGAATCTTTGACTTGA-CGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTA 33153 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||| || ||||| ||||| Sbjct 33152 ATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||||| ||||| || ||||||||||| | ||||| || | || || || || Sbjct 32861 TGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCGAGTTGT 32802 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || || || ||||||||||| | || | | |||||||||| || | || Sbjct 32801 TTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC-TGGATCTT 32743 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | | ||| | | | |||||| || ||||| |||| ||||| || || || || Sbjct 32742 CGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 32683 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||||||||| Sbjct 32682 CAGGGTCTTGACGAAGATTTGCAT 32659 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||||||||||| ||||| ||||| || | || |||||| | || || Sbjct 33095 ACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCG 33036 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || || || || || ||||||||||| | || | | |||||| || | Sbjct 33035 AGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGG 32976 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | | | | |||||| ||| || || || | |||||||| || Sbjct 32975 ATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 32916 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || || || ||||| Sbjct 32915 CCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| ||||| || || | || |||||| | || || | |||||| || || || Sbjct 32622 CTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAA 32563 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 || || ||||||||||||| ||| | || |||||||||| Sbjct 32562 AATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 32523 >seq2403 Length=4098 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| |||| ||||| || | || || ||||| || || || || | Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 2288 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || |||| |||||||| || ||||| || ||||| || | Sbjct 2289 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 2348 Query 43174 AGATTTGCA 43182 |||| |||| Sbjct 2349 AGATCTGCA 2357 >seq5961 Length=206 Score = 93.3 bits (102), Expect = 5e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 43060 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACC 43118 |||||||||||| ||| | | ||||||||| ||| || |||| ||| | | | | Sbjct 206 GCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCGATC 148 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 |||||||||||||| || || | |||||| || ||||| || || |||||||| |||||| Sbjct 147 GTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATT 88 Query 43179 TGCAT 43183 ||||| Sbjct 87 TGCAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571774456362080